Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   KSO_RS16980 Genome accession   NC_020272
Coordinates   3505468..3505902 (-) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens IT-45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3500468..3510902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS16965 (KSO_017430) - 3501071..3501919 (-) 849 WP_015388694.1 diguanylate cyclase domain-containing protein -
  KSO_RS16970 (KSO_017435) - 3501900..3502985 (-) 1086 WP_015388695.1 hypothetical protein -
  KSO_RS16975 (KSO_017440) - 3503218..3505404 (-) 2187 WP_003156261.1 DNA topoisomerase III -
  KSO_RS16980 (KSO_017445) lrpC 3505468..3505902 (-) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  KSO_RS16985 (KSO_017450) - 3506079..3506369 (+) 291 WP_003156265.1 DUF3817 domain-containing protein -
  KSO_RS16990 (KSO_017455) - 3506407..3507216 (-) 810 WP_014304362.1 lipid II flippase Amj family protein -
  KSO_RS16995 (KSO_017460) - 3507715..3508137 (-) 423 WP_015388696.1 pyridoxamine 5'-phosphate oxidase family protein -
  KSO_RS17000 (KSO_017465) - 3508144..3508767 (-) 624 WP_014304361.1 GNAT family N-acetyltransferase -
  KSO_RS17005 (KSO_017470) - 3508855..3509358 (-) 504 WP_014304360.1 D-lyxose/D-mannose family sugar isomerase -
  KSO_RS17010 (KSO_017475) - 3509371..3510231 (-) 861 WP_015388697.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=45977 KSO_RS16980 WP_003156263.1 3505468..3505902(-) (lrpC) [Bacillus amyloliquefaciens IT-45]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=45977 KSO_RS16980 WP_003156263.1 3505468..3505902(-) (lrpC) [Bacillus amyloliquefaciens IT-45]
ATGAAACTAGATAATGTGGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTGGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAGCGCTATACAT
TGGACATTGATCAAAAAAAGATCGGGCTCCCCGTCTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGGGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGTCTGGAAACGATCGAACACTTCATCAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799

Multiple sequence alignment