Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV198_RS15215 Genome accession   NZ_CP056515
Coordinates   3188245..3188859 (-) Length   204 a.a.
NCBI ID   WP_115258917.1    Uniprot ID   A0A4V6CGY5
Organism   Citrobacter freundii strain RHBSTW-00444     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3183245..3193859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV198_RS15200 (HV198_15205) helD 3183469..3185523 (-) 2055 WP_181506033.1 DNA helicase IV -
  HV198_RS15205 (HV198_15210) - 3185649..3186095 (+) 447 WP_096757638.1 YccF domain-containing protein -
  HV198_RS15210 (HV198_15215) yccS 3186114..3188267 (+) 2154 WP_096759437.1 YccS family putative transporter -
  HV198_RS15215 (HV198_15220) sxy/tfoX 3188245..3188859 (-) 615 WP_115258917.1 TfoX/Sxy family DNA transformation protein Regulator
  HV198_RS15220 (HV198_15225) sulA 3189076..3189585 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HV198_RS15225 (HV198_15230) ompA 3189940..3190998 (+) 1059 WP_115259970.1 porin OmpA -
  HV198_RS15230 (HV198_15235) matP 3191097..3191549 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HV198_RS15235 (HV198_15240) - 3191735..3193495 (+) 1761 WP_115258918.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23197.78 Da        Isoelectric Point: 9.1904

>NTDB_id=459760 HV198_RS15215 WP_115258917.1 3188245..3188859(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00444]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPAVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459760 HV198_RS15215 WP_115258917.1 3188245..3188859(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00444]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCTTGACGGTGGGTGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCAGCACTCCCGGCGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V6CGY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696