Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMJ70_RS03830 Genome accession   NZ_CP068565
Coordinates   753475..754023 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain CC19DZ036     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 748475..759023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMJ70_RS03800 (JMJ70_03800) ctsT 748518..748823 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  JMJ70_RS03805 (JMJ70_03805) proC 748820..749557 (-) 738 WP_072235236.1 pyrroline-5-carboxylate reductase Machinery gene
  JMJ70_RS03810 (JMJ70_03810) fliW 749557..749946 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  JMJ70_RS03815 (JMJ70_03815) - 750110..750757 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  JMJ70_RS03820 (JMJ70_03820) lon 750773..753148 (+) 2376 WP_002783351.1 endopeptidase La -
  JMJ70_RS03825 (JMJ70_03825) rpsR 753204..753464 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  JMJ70_RS03830 (JMJ70_03830) ssb 753475..754023 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  JMJ70_RS03835 (JMJ70_03835) rpsF 754032..754409 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  JMJ70_RS09515 - 754688..754891 (+) 204 WP_223207068.1 hypothetical protein -
  JMJ70_RS09520 - 754945..756960 (+) 2016 WP_233915654.1 MFS transporter -
  JMJ70_RS03845 (JMJ70_03845) - 756953..757593 (-) 641 Protein_757 DUF535 family protein -
  JMJ70_RS03850 (JMJ70_03850) rseP 757805..758908 (-) 1104 WP_002777070.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=459741 JMJ70_RS03830 WP_002777084.1 753475..754023(-) (ssb) [Campylobacter coli strain CC19DZ036]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=459741 JMJ70_RS03830 WP_002777084.1 753475..754023(-) (ssb) [Campylobacter coli strain CC19DZ036]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379