Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HV199_RS22465 | Genome accession | NZ_CP056508 |
| Coordinates | 4499448..4499984 (-) | Length | 178 a.a. |
| NCBI ID | WP_016807973.1 | Uniprot ID | A0A6L3Y3G1 |
| Organism | Citrobacter sp. RHBSTW-00446 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4437222..4511678 | 4499448..4499984 | within | 0 |
Gene organization within MGE regions
Location: 4437222..4511678
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HV199_RS22150 (HV199_22160) | - | 4437466..4438497 (-) | 1032 | WP_016807923.1 | site-specific integrase | - |
| HV199_RS22155 (HV199_22165) | - | 4438558..4440177 (-) | 1620 | WP_016807924.1 | TraI domain-containing protein | - |
| HV199_RS22160 (HV199_22170) | - | 4440244..4441752 (-) | 1509 | WP_029591438.1 | UvrD-helicase domain-containing protein | - |
| HV199_RS22165 (HV199_22175) | - | 4442063..4443919 (-) | 1857 | WP_029591439.1 | DUF2357 domain-containing protein | - |
| HV199_RS22170 (HV199_22180) | - | 4443931..4446489 (-) | 2559 | WP_016807927.1 | AAA family ATPase | - |
| HV199_RS22175 (HV199_22185) | - | 4446828..4447760 (-) | 933 | WP_016807928.1 | DUF1281 domain-containing protein | - |
| HV199_RS22180 (HV199_22190) | - | 4447866..4448852 (-) | 987 | WP_016807929.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| HV199_RS22185 (HV199_22195) | - | 4448934..4449281 (-) | 348 | WP_016807930.1 | hypothetical protein | - |
| HV199_RS22190 (HV199_22200) | - | 4449349..4449951 (-) | 603 | WP_016807931.1 | DUF3085 domain-containing protein | - |
| HV199_RS22195 (HV199_22205) | - | 4450027..4450674 (-) | 648 | WP_016807932.1 | hypothetical protein | - |
| HV199_RS22200 (HV199_22210) | - | 4450759..4451124 (-) | 366 | WP_016807933.1 | hypothetical protein | - |
| HV199_RS22205 (HV199_22215) | - | 4451203..4451577 (-) | 375 | WP_016807934.1 | hypothetical protein | - |
| HV199_RS22210 (HV199_22220) | - | 4451570..4451938 (-) | 369 | WP_045282254.1 | hypothetical protein | - |
| HV199_RS22215 (HV199_22225) | - | 4452342..4452644 (+) | 303 | WP_016807936.1 | PIN domain-containing protein | - |
| HV199_RS22220 (HV199_22230) | - | 4452673..4453381 (+) | 709 | Protein_4387 | IS1 family transposase | - |
| HV199_RS22225 (HV199_22235) | - | 4453460..4454155 (+) | 696 | Protein_4388 | IS1 family transposase | - |
| HV199_RS22230 (HV199_22240) | - | 4454170..4454310 (-) | 141 | Protein_4389 | maltose acetyltransferase domain-containing protein | - |
| HV199_RS22235 (HV199_22245) | lacY | 4454394..4455629 (-) | 1236 | WP_064146656.1 | lactose permease | - |
| HV199_RS22240 (HV199_22250) | lacZ | 4455681..4458755 (-) | 3075 | WP_181250253.1 | beta-galactosidase | - |
| HV199_RS22245 (HV199_22255) | lacI | 4458878..4459960 (-) | 1083 | WP_024193489.1 | DNA-binding transcriptional repressor LacI | - |
| HV199_RS22250 (HV199_22260) | - | 4460254..4460460 (+) | 207 | WP_016809494.1 | DUF1471 domain-containing protein | - |
| HV199_RS22255 (HV199_22265) | - | 4460616..4460900 (+) | 285 | WP_129008949.1 | hypothetical protein | - |
| HV199_RS22260 (HV199_22270) | - | 4460970..4461869 (-) | 900 | WP_026056053.1 | integrase domain-containing protein | - |
| HV199_RS22265 (HV199_22275) | - | 4463065..4463742 (+) | 678 | Protein_4396 | IS630-like element ISEc33 family transposase | - |
| HV199_RS22270 (HV199_22280) | - | 4463793..4464341 (-) | 549 | WP_221891797.1 | hypothetical protein | - |
| HV199_RS28715 | - | 4464553..4464795 (-) | 243 | WP_323807205.1 | DUF4113 domain-containing protein | - |
| HV199_RS28720 | - | 4464831..4465373 (-) | 543 | WP_050547113.1 | hypothetical protein | - |
| HV199_RS22280 (HV199_22290) | - | 4465427..4466535 (+) | 1109 | WP_100214960.1 | IS3 family transposase | - |
| HV199_RS22285 (HV199_22295) | - | 4467007..4468542 (-) | 1536 | WP_016239903.1 | IS66 family transposase | - |
| HV199_RS22290 (HV199_22300) | tnpB | 4468592..4468939 (-) | 348 | WP_000609174.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| HV199_RS22295 (HV199_22305) | - | 4468936..4469319 (-) | 384 | WP_001201739.1 | transposase | - |
| HV199_RS28385 | - | 4469440..4469709 (+) | 270 | WP_326928790.1 | hypothetical protein | - |
| HV199_RS22300 (HV199_22310) | - | 4469741..4471249 (-) | 1509 | WP_016808243.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| HV199_RS22305 (HV199_22315) | - | 4471252..4471590 (-) | 339 | WP_016808244.1 | hypothetical protein | - |
| HV199_RS22310 (HV199_22320) | - | 4471601..4473076 (-) | 1476 | WP_016808245.1 | integrating conjugative element protein | - |
| HV199_RS22315 (HV199_22325) | - | 4473076..4474068 (-) | 993 | WP_016808246.1 | TIGR03756 family integrating conjugative element protein | - |
| HV199_RS22320 (HV199_22330) | - | 4474065..4474463 (-) | 399 | WP_016808247.1 | TIGR03757 family integrating conjugative element protein | - |
| HV199_RS22325 (HV199_22335) | - | 4475426..4476730 (-) | 1305 | WP_016808248.1 | restriction endonuclease | - |
| HV199_RS22330 (HV199_22340) | - | 4476734..4477873 (-) | 1140 | WP_016808249.1 | AAA family ATPase | - |
| HV199_RS22335 (HV199_22345) | - | 4477863..4478435 (-) | 573 | WP_016808250.1 | hypothetical protein | - |
| HV199_RS22340 (HV199_22350) | - | 4478428..4480647 (-) | 2220 | WP_016808251.1 | N-6 DNA methylase | - |
| HV199_RS22345 (HV199_22355) | - | 4480644..4481738 (-) | 1095 | WP_016808252.1 | DNA adenine methylase | - |
| HV199_RS22350 (HV199_22360) | - | 4482430..4482807 (-) | 378 | WP_016808254.1 | hypothetical protein | - |
| HV199_RS22355 (HV199_22365) | - | 4482804..4485662 (-) | 2859 | WP_016808255.1 | conjugative transfer ATPase | - |
| HV199_RS22360 (HV199_22370) | - | 4485662..4486072 (-) | 411 | WP_016808256.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| HV199_RS22365 (HV199_22375) | - | 4486072..4486473 (-) | 402 | WP_223479954.1 | hypothetical protein | - |
| HV199_RS22370 (HV199_22380) | - | 4486451..4487953 (-) | 1503 | WP_016808257.1 | TIGR03752 family integrating conjugative element protein | - |
| HV199_RS22375 (HV199_22385) | - | 4487943..4488893 (-) | 951 | WP_016808258.1 | TIGR03749 family integrating conjugative element protein | - |
| HV199_RS22380 (HV199_22390) | - | 4488893..4489552 (-) | 660 | WP_016808259.1 | TIGR03746 family integrating conjugative element protein | - |
| HV199_RS22385 (HV199_22395) | - | 4489549..4489905 (-) | 357 | WP_004115534.1 | TIGR03750 family conjugal transfer protein | - |
| HV199_RS22390 (HV199_22400) | - | 4489918..4490304 (-) | 387 | WP_016808260.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| HV199_RS22395 (HV199_22405) | - | 4490339..4490581 (-) | 243 | WP_003029734.1 | TIGR03758 family integrating conjugative element protein | - |
| HV199_RS22400 (HV199_22410) | - | 4490581..4490928 (-) | 348 | WP_016808261.1 | RAQPRD family integrative conjugative element protein | - |
| HV199_RS22405 (HV199_22415) | - | 4491113..4491460 (+) | 348 | WP_016808262.1 | FxLYD domain-containing protein | - |
| HV199_RS22410 (HV199_22420) | - | 4491551..4492309 (-) | 759 | WP_006785966.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| HV199_RS22415 (HV199_22425) | traD | 4492302..4494401 (-) | 2100 | WP_016808263.1 | type IV conjugative transfer system coupling protein TraD | - |
| HV199_RS22420 (HV199_22430) | - | 4494394..4494882 (-) | 489 | WP_016808264.1 | hypothetical protein | - |
| HV199_RS22425 (HV199_22435) | - | 4494893..4495465 (-) | 573 | WP_017145109.1 | restriction endonuclease | - |
| HV199_RS22430 (HV199_22440) | - | 4495465..4495998 (-) | 534 | WP_016807967.1 | integrating conjugative element protein | - |
| HV199_RS22435 (HV199_22445) | - | 4496004..4496639 (-) | 636 | WP_088221852.1 | transglycosylase SLT domain-containing protein | - |
| HV199_RS22440 (HV199_22450) | - | 4496618..4497340 (-) | 723 | WP_016807969.1 | TIGR03759 family integrating conjugative element protein | - |
| HV199_RS22445 (HV199_22455) | - | 4497352..4498110 (-) | 759 | WP_016807970.1 | hypothetical protein | - |
| HV199_RS22450 (HV199_22460) | - | 4498107..4498772 (-) | 666 | WP_016807971.1 | PilL N-terminal domain-containing protein | - |
| HV199_RS22455 (HV199_22465) | - | 4498909..4499157 (-) | 249 | WP_004115558.1 | DUF2442 domain-containing protein | - |
| HV199_RS22460 (HV199_22470) | - | 4499141..4499383 (-) | 243 | WP_016807972.1 | DUF4160 domain-containing protein | - |
| HV199_RS22465 (HV199_22475) | ssb | 4499448..4499984 (-) | 537 | WP_016807973.1 | single-stranded DNA-binding protein | Machinery gene |
| HV199_RS22470 (HV199_22480) | - | 4500045..4500515 (-) | 471 | WP_016807974.1 | STY4534 family ICE replication protein | - |
| HV199_RS22475 (HV199_22485) | - | 4501151..4503160 (-) | 2010 | WP_016807975.1 | DNA topoisomerase III | - |
| HV199_RS22480 (HV199_22490) | - | 4503176..4503730 (-) | 555 | WP_016807976.1 | hypothetical protein | - |
| HV199_RS22485 (HV199_22495) | - | 4503732..4504457 (-) | 726 | WP_016807977.1 | TIGR03761 family integrating conjugative element protein | - |
| HV199_RS22490 (HV199_22500) | - | 4504526..4504762 (+) | 237 | WP_134892789.1 | hypothetical protein | - |
| HV199_RS22495 (HV199_22505) | - | 4504749..4505987 (-) | 1239 | WP_016807978.1 | STY4528 family pathogenicity island replication protein | - |
| HV199_RS22500 (HV199_22510) | - | 4506087..4506335 (-) | 249 | WP_004115572.1 | hypothetical protein | - |
| HV199_RS22505 (HV199_22515) | - | 4506332..4506922 (-) | 591 | WP_006777722.1 | DUF2857 domain-containing protein | - |
| HV199_RS22510 (HV199_22520) | - | 4506929..4507639 (-) | 711 | WP_016807979.1 | DUF2786 domain-containing protein | - |
| HV199_RS22515 (HV199_22525) | - | 4507632..4509332 (-) | 1701 | WP_016807980.1 | ParB family protein | - |
| HV199_RS22520 (HV199_22530) | dnaB-PI | 4509329..4510699 (-) | 1371 | WP_004115579.1 | SPI-7-type island replicative DNA helicase | - |
| HV199_RS22525 (HV199_22535) | - | 4510692..4511567 (-) | 876 | WP_016807981.1 | ParA family protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 19182.31 Da Isoelectric Point: 6.7299
>NTDB_id=459741 HV199_RS22465 WP_016807973.1 4499448..4499984(-) (ssb) [Citrobacter sp. RHBSTW-00446]
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYITEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL
MSSRGVNKVILVGNLGQDPEVRYIPNGSAVATLSLATSESWRDKQSGEQKEVTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYITEVVVNIGGTMQMLGGRQSGSGQNTSSRNDWGQPQQPSGPTHSGQASGSSAGAPPMDFDDD
IPFIGFGYGVPKSAIHAL
Nucleotide
Download Length: 537 bp
>NTDB_id=459741 HV199_RS22465 WP_016807973.1 4499448..4499984(-) (ssb) [Citrobacter sp. RHBSTW-00446]
ATGTCCTCACGCGGCGTTAACAAGGTGATTCTTGTCGGTAATCTCGGCCAGGATCCTGAAGTGCGTTATATTCCCAATGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGTGATAAGCAGTCCGGTGAACAGAAAGAAGTGACCG
AATGGCACCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGTCTGGCCAGGAGAAATACATCACAGAGGTGGTGGTAAACATTGG
TGGCACCATGCAGATGCTTGGCGGTCGCCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA
ATGTCCTCACGCGGCGTTAACAAGGTGATTCTTGTCGGTAATCTCGGCCAGGATCCTGAAGTGCGTTATATTCCCAATGG
CAGTGCAGTTGCCACCCTTTCTCTGGCCACGTCTGAGAGCTGGCGTGATAAGCAGTCCGGTGAACAGAAAGAAGTGACCG
AATGGCACCGGGTGGTTATTTTCGGCAAGCTGGCAGAAATTGCGGGTGAATATCTGCGCAAAGGCTCCCAGGTTTACATC
GAGGGCCAGCTGCGCACACGCAAATGGACCGATCAGTCTGGCCAGGAGAAATACATCACAGAGGTGGTGGTAAACATTGG
TGGCACCATGCAGATGCTTGGCGGTCGCCAGTCCGGCAGCGGTCAGAATACGTCTTCCCGGAATGACTGGGGCCAGCCTC
AGCAACCTTCCGGACCGACTCACAGTGGCCAGGCTTCCGGCAGCAGTGCCGGTGCGCCACCGATGGACTTCGATGACGAT
ATACCGTTCATTGGATTCGGGTATGGAGTACCAAAATCGGCAATCCATGCACTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
64.407 |
99.438 |
0.64 |
| ssb | Glaesserella parasuis strain SC1401 |
49.171 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
44.633 |
99.438 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
44.318 |
98.876 |
0.438 |