Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV201_RS16490 Genome accession   NZ_CP056505
Coordinates   3329602..3330216 (-) Length   204 a.a.
NCBI ID   WP_181522605.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00449     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3324602..3335216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV201_RS16475 (HV201_16480) helD 3324826..3326880 (-) 2055 WP_061547834.1 DNA helicase IV -
  HV201_RS16480 (HV201_16485) - 3327006..3327452 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV201_RS16485 (HV201_16490) yccS 3327471..3329624 (+) 2154 WP_032941200.1 YccS family putative transporter -
  HV201_RS16490 (HV201_16495) sxy/tfoX 3329602..3330216 (-) 615 WP_181522605.1 TfoX/Sxy family DNA transformation protein Regulator
  HV201_RS16495 (HV201_16500) sulA 3330434..3330943 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  HV201_RS16500 (HV201_16505) ompA 3331301..3332347 (+) 1047 WP_003035883.1 porin OmpA -
  HV201_RS16505 (HV201_16510) matP 3332437..3332889 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV201_RS16510 (HV201_16515) - 3333075..3334835 (+) 1761 WP_061547833.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23212.60 Da        Isoelectric Point: 8.6048

>NTDB_id=459715 HV201_RS16490 WP_181522605.1 3329602..3330216(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00449]
MKDLSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459715 HV201_RS16490 WP_181522605.1 3329602..3330216(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00449]
ATGAAAGATCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGTGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686