Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV211_RS14550 Genome accession   NZ_CP056473
Coordinates   3040227..3040841 (-) Length   204 a.a.
NCBI ID   WP_117341734.1    Uniprot ID   A0AAU7GM83
Organism   Citrobacter freundii strain RHBSTW-00477     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3035227..3045841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV211_RS14535 (HV211_14530) helD 3035451..3037505 (-) 2055 WP_181631370.1 DNA helicase IV -
  HV211_RS14540 (HV211_14535) - 3037631..3038077 (+) 447 WP_096757638.1 YccF domain-containing protein -
  HV211_RS14545 (HV211_14540) yccS 3038096..3040249 (+) 2154 WP_096759437.1 YccS family putative transporter -
  HV211_RS14550 (HV211_14545) sxy/tfoX 3040227..3040841 (-) 615 WP_117341734.1 TfoX/Sxy family DNA transformation protein Regulator
  HV211_RS14555 (HV211_14550) sulA 3041058..3041567 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  HV211_RS14560 (HV211_14555) ompA 3041923..3042981 (+) 1059 WP_115259970.1 porin OmpA -
  HV211_RS14565 (HV211_14560) matP 3043080..3043532 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  HV211_RS14570 (HV211_14565) - 3043718..3045478 (+) 1761 WP_181631371.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23257.84 Da        Isoelectric Point: 9.1904

>NTDB_id=459667 HV211_RS14550 WP_117341734.1 3040227..3040841(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00477]
MKNLSYARIYKSQEYLASLGTISYRSLFGSYSLTVGDTVFAMVADGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGINDESTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459667 HV211_RS14550 WP_117341734.1 3040227..3040841(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00477]
ATGAAAAACCTCTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTAGGTACAATTAGCTACCGCTCTTT
ATTTGGCAGTTATAGCCTGACGGTGGGCGATACGGTCTTTGCAATGGTTGCCGACGGTGAGTTATACCTGCGGGCCTGTG
AGCAAAGCGTACAGTACTGTGTCAAACATTCCCCGGTCTGGTTGACGTTTATGAAGCGGGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCGCTGGATGCCGCAGT
AAAAGAAAAGCAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAACGATGAGAGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGTGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.608

100

0.696