Detailed information NTG0459666

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JK368_RS14560
• Genome accession: NZ_CP068394
• Coordinates: 2998227..2999219 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain M-17
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2993227..3004219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JK368_RS14540 (JK368_14540)	ygbM	2993865..2994641 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
JK368_RS14545 (JK368_14545)	ygbN	2994730..2996094 (+)	1365	WP_000104433.1	GntP family transporter	-
JK368_RS14550 (JK368_14550)	-	2996237..2997280 (-)	1044	WP_001161577.1	MBL fold metallo-hydrolase	-
JK368_RS14555 (JK368_14555)	-	2997505..2998056 (+)	552	WP_001179443.1	flavodoxin family protein	-
JK368_RS14560 (JK368_14560)	rpoS	2998227..2999219 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JK368_RS14565 (JK368_14565)	nlpD	2999282..3000376 (-)	1095	WP_306217602.1	murein hydrolase activator NlpD	-
JK368_RS14570 (JK368_14570)	pcm	3000561..3001187 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JK368_RS14575 (JK368_14575)	surE	3001181..3001942 (-)	762	WP_001350156.1	5'/3'-nucleotidase SurE	-
JK368_RS14580 (JK368_14580)	truD	3001923..3002972 (-)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
JK368_RS14585 (JK368_14585)	ispF	3002969..3003448 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JK368_RS14590 (JK368_14590)	ispD	3003448..3004158 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=459666 JK368_RS14560 WP_000081550.1 2998227..2999219(-) (rpoS) [Escherichia coli strain M-17]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=459666 JK368_RS14560 WP_000081550.1 2998227..2999219(-) (rpoS) [Escherichia coli strain M-17]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715