Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JK368_RS11025 Genome accession   NZ_CP068394
Coordinates   2237125..2238552 (+) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain M-17     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2232125..2243552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK368_RS10985 (JK368_10985) yeeW 2232309..2232503 (+) 195 WP_000988601.1 DUF5983 family protein -
  JK368_RS10990 (JK368_10990) - 2232549..2232629 (+) 81 Protein_2188 hypothetical protein -
  JK368_RS10995 (JK368_10995) - 2232918..2233064 (-) 147 Protein_2189 transposase domain-containing protein -
  JK368_RS11000 (JK368_11000) - 2233118..2233300 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  JK368_RS11005 (JK368_11005) tmaR 2233401..2233730 (-) 330 WP_000450409.1 DUF496 family protein -
  JK368_RS11010 (JK368_11010) yeeA 2233902..2234960 (-) 1059 WP_001200890.1 FUSC family protein -
  JK368_RS11015 (JK368_11015) sbmC 2235158..2235631 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  JK368_RS11020 (JK368_11020) dacD 2235750..2236916 (-) 1167 WP_001519880.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  JK368_RS11025 (JK368_11025) sbcB 2237125..2238552 (+) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  JK368_RS11030 (JK368_11030) plaP 2238626..2239984 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  JK368_RS11035 (JK368_11035) yoeI 2239974..2240036 (-) 63 WP_010723108.1 membrane protein YoeI -
  JK368_RS11040 (JK368_11040) yeeY 2240251..2241180 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  JK368_RS11045 (JK368_11045) yeeZ 2241226..2242050 (-) 825 WP_000754733.1 SDR family oxidoreductase -
  JK368_RS11050 (JK368_11050) yoeB 2242133..2242387 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  JK368_RS11055 (JK368_11055) yefM 2242384..2242635 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  JK368_RS11060 (JK368_11060) hisL 2242918..2242968 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=459653 JK368_RS11025 WP_000980557.1 2237125..2238552(+) (sbcB) [Escherichia coli strain M-17]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=459653 JK368_RS11025 WP_000980557.1 2237125..2238552(+) (sbcB) [Escherichia coli strain M-17]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583