Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV229_RS16195 Genome accession   NZ_CP056421
Coordinates   3323224..3323838 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. RHBSTW-00524     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3318224..3328838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV229_RS16180 (HV229_16180) helD 3318448..3320502 (-) 2055 WP_181545906.1 DNA helicase IV -
  HV229_RS16185 (HV229_16185) - 3320628..3321074 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HV229_RS16190 (HV229_16190) yccS 3321093..3323246 (+) 2154 WP_181545908.1 YccS family putative transporter -
  HV229_RS16195 (HV229_16195) sxy/tfoX 3323224..3323838 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  HV229_RS16200 (HV229_16200) sulA 3324055..3324564 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  HV229_RS16205 (HV229_16205) ompA 3324922..3325980 (+) 1059 WP_046275731.1 porin OmpA -
  HV229_RS16210 (HV229_16210) matP 3326079..3326531 (-) 453 WP_181545910.1 macrodomain Ter protein MatP -
  HV229_RS16215 (HV229_16215) - 3326717..3328477 (+) 1761 WP_080858512.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=459530 HV229_RS16195 WP_016152483.1 3323224..3323838(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00524]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459530 HV229_RS16195 WP_016152483.1 3323224..3323838(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00524]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATTTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCAGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681