Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   KSO_RS12870 Genome accession   NC_020272
Coordinates   2715654..2716325 (-) Length   223 a.a.
NCBI ID   WP_003154900.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2710654..2721325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS20445 (KSO_013325) - 2711008..2711742 (-) 735 WP_015388362.1 sensor histidine kinase -
  KSO_RS20450 (KSO_013330) - 2711658..2712257 (-) 600 WP_015388363.1 hypothetical protein -
  KSO_RS12850 (KSO_013335) - 2712323..2712514 (-) 192 WP_003154894.1 hypothetical protein -
  KSO_RS12855 (KSO_013340) - 2712532..2713263 (-) 732 WP_003154895.1 ABC transporter permease -
  KSO_RS12860 (KSO_013345) - 2713244..2714179 (-) 936 WP_015388364.1 ABC transporter ATP-binding protein -
  KSO_RS12865 (KSO_013350) - 2714299..2715657 (-) 1359 WP_003154898.1 sensor histidine kinase -
  KSO_RS12870 (KSO_013355) scnR 2715654..2716325 (-) 672 WP_003154900.1 response regulator transcription factor Regulator
  KSO_RS12875 (KSO_013360) - 2716509..2718002 (-) 1494 WP_003154902.1 UxaA family hydrolase -
  KSO_RS12880 (KSO_013365) - 2717999..2719444 (-) 1446 WP_015388365.1 tagaturonate reductase -
  KSO_RS12885 (KSO_013370) - 2719520..2720518 (-) 999 WP_003154904.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 26422.68 Da        Isoelectric Point: 6.5038

>NTDB_id=45949 KSO_RS12870 WP_003154900.1 2715654..2716325(-) (scnR) [Bacillus amyloliquefaciens IT-45]
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ

Nucleotide


Download         Length: 672 bp        

>NTDB_id=45949 KSO_RS12870 WP_003154900.1 2715654..2716325(-) (scnR) [Bacillus amyloliquefaciens IT-45]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCGCAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(146-221)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36

100

0.363