Detailed information NTG0045944

Bioinformatically predicted

Overview

• Name: clpE
• Type: Regulator
• Locus tag: KSO_RS12215
• Genome accession: NC_020272
• Coordinates: 2585676..2587772 (+)
• Length: 698 a.a.
• NCBI ID: WP_015388313.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens IT-45
• Function: repress competence development (at the early growth phase) (predicted from homology) Competence regulation

Genomic Context

Location: 2580676..2592772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSO_RS12185 (KSO_012605)	queE	2580945..2581676 (-)	732	WP_014304903.1	7-carboxy-7-deazaguanine synthase QueE	-
KSO_RS12190 (KSO_012610)	queD	2581669..2582049 (-)	381	WP_228842158.1	6-carboxytetrahydropterin synthase QueD	-
KSO_RS12195 (KSO_012615)	queC	2582110..2582769 (-)	660	WP_003154679.1	7-cyano-7-deazaguanine synthase QueC	-
KSO_RS12200 (KSO_012620)	-	2583019..2584140 (-)	1122	WP_014304902.1	hypothetical protein	-
KSO_RS12205 (KSO_012625)	-	2584238..2585275 (-)	1038	WP_014304901.1	membrane protein	-
KSO_RS12215 (KSO_012635)	clpE	2585676..2587772 (+)	2097	WP_015388313.1	ATP-dependent protease ATP-binding subunit ClpE	Regulator
KSO_RS12220 (KSO_012640)	motA	2587942..2588757 (+)	816	WP_003154684.1	flagellar motor stator protein MotA	-
KSO_RS12225 (KSO_012645)	motB	2588729..2589514 (+)	786	WP_003154685.1	flagellar motor protein MotB	-
KSO_RS12230 (KSO_012650)	-	2589550..2589996 (-)	447	WP_003154686.1	MarR family winged helix-turn-helix transcriptional regulator	-
KSO_RS12235 (KSO_012655)	-	2590195..2591712 (+)	1518	WP_046559543.1	ATP-binding protein	-
KSO_RS12240 (KSO_012660)	-	2591923..2592183 (-)	261	WP_003154690.1	aspartyl-phosphate phosphatase Spo0E family protein	-

Sequence

Protein

• Length: 698 a.a.
• Molecular weight: 77864.94 Da
• Isoelectric Point: 5.3690

>NTDB_id=45944 KSO_RS12215 WP_015388313.1 2585676..2587772(+) (clpE) [Bacillus amyloliquefaciens IT-45]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFRFPLEQGFAPNQNKQQAGPEKGLLDELAQNV
TNGAKAGLIDPVIGRDNEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELYLLDVASLVAN
TGIRGQFEERMKQLMNELRERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALREENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVMEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDD
AKEKVAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDDNEIKAFHVVMEEDGIKVRAQ

Nucleotide

• Length: 2097 bp

>NTDB_id=45944 KSO_RS12215 WP_015388313.1 2585676..2587772(+) (clpE) [Bacillus amyloliquefaciens IT-45]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCAGATTCCCGTTAG
AGCAAGGTTTCGCTCCCAATCAAAATAAACAGCAGGCCGGCCCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGACCCTGTGATCGGCCGCGACAATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAGCCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTACCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAGAGAACGGAAAAATGTCATCTTGTT
CATTGATGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
CGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAACTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCGGGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCTTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGCGCGG
AGCATATTCAAGCCATCATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTCAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGTGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATTATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTTAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCATGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATTATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAACTTGAAGATACATTAAAAGAGCGCGGCATCAGCCTGAGCGTCACCGATGAT
GCGAAAGAAAAAGTCGCTGAAATCGGCTACCACCCCGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATGACAACGAAATCAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (436-602)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (608-679)

• AAA lid domain (AAA_lid_9) (252-351)

• ATPase family associated with various cellular activities (AAA) (AAA) (115-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpE	Streptococcus mutans UA159	57.279	100	0.603
clpC	Lactococcus lactis subsp. cremoris KW2	56.676	100	0.596
clpE	Streptococcus pneumoniae Rx1	56.267	100	0.592
clpE	Streptococcus pneumoniae R6	56.267	100	0.592
clpE	Streptococcus pneumoniae D39	56.267	100	0.592
clpE	Streptococcus pneumoniae TIGR4	56.267	100	0.592
clpC	Bacillus subtilis subsp. subtilis str. 168	54.545	91.404	0.499
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	46.519	90.544	0.421
clpC	Streptococcus thermophilus LMD-9	44.154	93.123	0.411
clpC	Streptococcus thermophilus LMG 18311	43.846	93.123	0.408
clpC	Streptococcus pneumoniae TIGR4	45.88	88.682	0.407
clpC	Streptococcus pneumoniae Rx1	45.88	88.682	0.407
clpC	Streptococcus pneumoniae D39	45.88	88.682	0.407
clpC	Streptococcus mutans UA159	44.553	88.109	0.393