Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV247_RS16555 Genome accession   NZ_CP056385
Coordinates   3331453..3332049 (-) Length   198 a.a.
NCBI ID   WP_181491475.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain RHBSTW-00610     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3326453..3337049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV247_RS16540 (HV247_16540) helD 3326661..3328715 (-) 2055 WP_032424765.1 DNA helicase IV -
  HV247_RS16545 (HV247_16545) - 3328840..3329286 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HV247_RS16550 (HV247_16550) yccS 3329304..3331439 (+) 2136 WP_032424764.1 YccS family putative transporter -
  HV247_RS16555 (HV247_16555) sxy/tfoX 3331453..3332049 (-) 597 WP_181491475.1 TfoX/Sxy family DNA transformation protein Regulator
  HV247_RS16560 (HV247_16560) sulA 3332398..3332907 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HV247_RS16565 (HV247_16565) ompA 3333260..3334330 (+) 1071 WP_002898408.1 porin OmpA -
  HV247_RS16570 (HV247_16570) matP 3334462..3334914 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HV247_RS16575 (HV247_16575) - 3335100..3336857 (+) 1758 WP_032424762.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22560.17 Da        Isoelectric Point: 10.0350

>NTDB_id=459415 HV247_RS16555 WP_181491475.1 3331453..3332049(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00610]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRLNN
ASLSLSVLLALEGAIAGVHTAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=459415 HV247_RS16555 WP_181491475.1 3331453..3332049(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00610]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCTTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATACCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51