Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   KSO_RS11520 Genome accession   NC_020272
Coordinates   2410110..2411132 (-) Length   340 a.a.
NCBI ID   WP_003154464.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2405110..2416132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS11495 (KSO_011880) - 2405615..2406496 (-) 882 WP_015388271.1 2-dehydropantoate 2-reductase -
  KSO_RS11500 (KSO_011885) - 2406659..2407141 (+) 483 WP_015388272.1 N-acetyltransferase -
  KSO_RS11505 (KSO_011890) gerR 2407182..2407757 (-) 576 WP_003154450.1 sporulation-specific transcriptional regulator GerR -
  KSO_RS19625 (KSO_011895) rpmF 2407916..2408095 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  KSO_RS11510 (KSO_011900) - 2408117..2408635 (-) 519 WP_003154459.1 YceD family protein -
  KSO_RS11515 (KSO_011910) - 2408844..2410091 (+) 1248 WP_015388273.1 nucleotidyltransferase -
  KSO_RS11520 (KSO_011915) sepM 2410110..2411132 (-) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator
  KSO_RS11525 (KSO_011920) - 2411138..2411917 (-) 780 WP_015388274.1 patatin family protein -
  KSO_RS11530 (KSO_011925) ylbJ 2412097..2413323 (+) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  KSO_RS11535 (KSO_011930) coaD 2413342..2413824 (-) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  KSO_RS11540 (KSO_011935) rsmD 2413829..2414383 (-) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KSO_RS11545 (KSO_011940) - 2414383..2414592 (-) 210 WP_015388275.1 hypothetical protein -
  KSO_RS11550 (KSO_011945) - 2414683..2414955 (-) 273 WP_003154470.1 YlbG family protein -
  KSO_RS11555 (KSO_011950) ylbF 2415014..2415463 (-) 450 WP_003154472.1 YlbF family regulator Regulator
  KSO_RS11560 (KSO_011955) - 2415534..2415773 (-) 240 WP_003154475.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37418.97 Da        Isoelectric Point: 7.3848

>NTDB_id=45938 KSO_RS11520 WP_003154464.1 2410110..2411132(-) (sepM) [Bacillus amyloliquefaciens IT-45]
MKAKHFRWVFIILILLIAVTFIKLPYYITQPGEASELRPLIKVDGGYPEKGSLSLMTVKVGPANPYTYLWAKVHPYDEIV
PDESIKEEGESDSDYMKRQLQMMKSSQENAVIAAYQKAGKQVKYSFNGIFASSVVSDMPAKGKIEVGDKIISADGKTYES
AEKLIDYISSKKAGEKVTFHIERDTKEKTVDIVLKSFPDDPKRAGIGVALYTDRNVKVKPDLHFSIENIGGPSAGLMMSL
EIYNQLTKPDETKGYNIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGAENSDYKNAVKTAKAIKSDMKIV
PVDTMQDALDYLDQLKVKST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=45938 KSO_RS11520 WP_003154464.1 2410110..2411132(-) (sepM) [Bacillus amyloliquefaciens IT-45]
ATGAAAGCAAAACATTTTCGCTGGGTGTTTATCATCCTGATCTTATTAATTGCTGTTACATTTATTAAGCTTCCGTATTA
CATTACACAGCCGGGAGAAGCATCAGAGCTGAGACCGCTGATTAAGGTGGACGGAGGCTATCCTGAAAAAGGAAGCCTTT
CCTTGATGACTGTCAAAGTAGGCCCCGCCAATCCGTATACATATCTTTGGGCGAAAGTGCATCCTTACGATGAAATCGTC
CCTGATGAAAGCATAAAAGAAGAGGGCGAATCGGACTCGGATTATATGAAGCGCCAGCTGCAAATGATGAAAAGCTCCCA
AGAAAACGCGGTTATTGCCGCTTATCAAAAAGCCGGGAAACAGGTGAAATACTCATTTAACGGGATTTTCGCCAGCTCAG
TCGTCTCTGACATGCCGGCAAAAGGAAAAATAGAGGTCGGTGATAAAATCATCAGCGCGGACGGGAAAACATACGAATCC
GCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGGGAAAAAGTAACGTTTCACATTGAACGGGACACGAAAGA
AAAGACCGTTGACATTGTGCTGAAATCATTCCCGGACGACCCGAAAAGAGCGGGAATCGGCGTCGCGTTATATACGGATC
GGAACGTGAAAGTGAAGCCGGATCTCCATTTCAGCATTGAAAATATCGGCGGGCCTTCTGCGGGTCTCATGATGTCTTTA
GAAATTTACAACCAGCTGACAAAACCTGACGAAACAAAAGGCTATAATATAGCCGGAACGGGGACAATCGACGTGGACGG
CAAGGTCGGACCGATCGGCGGAATCGATCAGAAAGTCGTCGCCGCAGACAAAGCGGGAAAAGATATTTTCTTTGCGCCGA
ATCAAAACGGAGCTGAAAATTCTGATTACAAAAATGCGGTAAAAACAGCGAAAGCAATCAAGTCCGATATGAAGATCGTC
CCTGTCGACACCATGCAGGACGCACTTGACTATTTGGATCAGCTGAAAGTAAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(100-218)

PDZ domain (PDZ_2)

(128-193)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(231-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.663

100

0.391

Multiple sequence alignment