Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV253_RS16850 Genome accession   NZ_CP056372
Coordinates   3359186..3359782 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain RHBSTW-00636     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3354186..3364782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV253_RS16835 (HV253_16840) helD 3354394..3356448 (-) 2055 WP_009308304.1 DNA helicase IV -
  HV253_RS16840 (HV253_16845) - 3356573..3357019 (+) 447 WP_004224032.1 YccF domain-containing protein -
  HV253_RS16845 (HV253_16850) yccS 3357037..3359172 (+) 2136 WP_004213263.1 YccS family putative transporter -
  HV253_RS16850 (HV253_16855) sxy/tfoX 3359186..3359782 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  HV253_RS16855 (HV253_16860) sulA 3360131..3360640 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  HV253_RS16860 (HV253_16865) ompA 3360993..3362063 (+) 1071 WP_002898408.1 porin OmpA -
  HV253_RS16865 (HV253_16870) matP 3362194..3362646 (-) 453 WP_064159654.1 macrodomain Ter protein MatP -
  HV253_RS16870 (HV253_16875) - 3362832..3364589 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=459369 HV253_RS16850 WP_004150836.1 3359186..3359782(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00636]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=459369 HV253_RS16850 WP_004150836.1 3359186..3359782(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00636]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGAACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51