Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HV258_RS22520 Genome accession   NZ_CP056361
Coordinates   4663037..4663564 (-) Length   175 a.a.
NCBI ID   WP_016155359.1    Uniprot ID   A0AAE2J7N6
Organism   Citrobacter sp. RHBSTW-00667     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4646071..4663564 4663037..4663564 within 0


Gene organization within MGE regions


Location: 4646071..4663564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV258_RS22440 (HV258_22450) - 4646071..4646637 (+) 567 WP_081051437.1 DNA adenine methylase -
  HV258_RS22445 (HV258_22455) - 4646634..4647479 (+) 846 WP_048216955.1 8-oxoguanine DNA glycosylase -
  HV258_RS22450 (HV258_22460) - 4647423..4648097 (-) 675 WP_223862018.1 dehydrogenase -
  HV258_RS22455 (HV258_22465) - 4648075..4648680 (-) 606 WP_048216956.1 7-cyano-7-deazaguanine synthase -
  HV258_RS22460 (HV258_22470) - 4648677..4649918 (-) 1242 WP_081051438.1 PfkB family carbohydrate kinase -
  HV258_RS22465 (HV258_22475) - 4649915..4650247 (-) 333 WP_048216957.1 hypothetical protein -
  HV258_RS22470 (HV258_22480) - 4650607..4651212 (+) 606 WP_048216958.1 hypothetical protein -
  HV258_RS22475 (HV258_22485) - 4651497..4651739 (-) 243 WP_048216959.1 hypothetical protein -
  HV258_RS26480 - 4651999..4652067 (+) 69 Protein_4437 hypothetical protein -
  HV258_RS22480 (HV258_22490) - 4652169..4653200 (+) 1032 WP_001752311.1 IS630-like element ISEc33 family transposase -
  HV258_RS22485 (HV258_22495) - 4653236..4653619 (+) 384 Protein_4439 site-specific integrase -
  HV258_RS22490 (HV258_22500) - 4653623..4655749 (+) 2127 WP_059347289.1 AAA family ATPase -
  HV258_RS22495 (HV258_22505) - 4655752..4657443 (+) 1692 WP_059347290.1 ATP-dependent helicase -
  HV258_RS22500 (HV258_22510) - 4657644..4658063 (-) 420 WP_048216962.1 hypothetical protein -
  HV258_RS22505 (HV258_22515) - 4658056..4660089 (-) 2034 WP_048216963.1 integrase -
  HV258_RS22510 (HV258_22520) - 4660082..4661641 (-) 1560 WP_096150258.1 site-specific integrase -
  HV258_RS22515 (HV258_22525) - 4661631..4662878 (-) 1248 WP_048216965.1 site-specific integrase -
  HV258_RS22520 (HV258_22530) ssb 4663037..4663564 (-) 528 WP_016155359.1 single-stranded DNA-binding protein SSB1 Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18749.79 Da        Isoelectric Point: 5.2456

>NTDB_id=459326 HV258_RS22520 WP_016155359.1 4663037..4663564(-) (ssb) [Citrobacter sp. RHBSTW-00667]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=459326 HV258_RS22520 WP_016155359.1 4663037..4663564(-) (ssb) [Citrobacter sp. RHBSTW-00667]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTGGTGCTGTTCGGCAAACTGGCGGAAGTTGCCAGCGAATATCTGCGTAAAGGTTCCCAGGTCTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGTTGGGCGGTCGTCAGGGTGGTGGGGCTCCGGCAGGTGGCGGCCAGCAGCAGGGGGGTTGGGGTC
AGCCTCAGCAGCCGCAAGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCGGCTCCGGCAGCG
CCGTCTAATGAGCCGCCGATGGATTTCGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.586

100

0.771
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

48.333

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371