Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   JJQ57_RS03845 Genome accession   NZ_CP068239
Coordinates   813959..814483 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PA19-3047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 808959..819483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJQ57_RS03825 (JJQ57_03825) - 809026..811497 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  JJQ57_RS03830 (JJQ57_03830) pilM 811682..812746 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  JJQ57_RS03835 (JJQ57_03835) pilN 812746..813342 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  JJQ57_RS03840 (JJQ57_03840) pilO 813339..813962 (+) 624 WP_003095838.1 type 4a pilus biogenesis protein PilO Machinery gene
  JJQ57_RS03845 (JJQ57_03845) comL/pilP 813959..814483 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  JJQ57_RS03850 (JJQ57_03850) pilQ 814537..816681 (+) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  JJQ57_RS03855 (JJQ57_03855) aroK 816693..817211 (+) 519 WP_003095833.1 shikimate kinase AroK -
  JJQ57_RS03860 (JJQ57_03860) aroB 817261..818367 (+) 1107 WP_003095831.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=459307 JJQ57_RS03845 WP_003095836.1 813959..814483(+) (comL/pilP) [Pseudomonas aeruginosa strain PA19-3047]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=459307 JJQ57_RS03845 WP_003095836.1 813959..814483(+) (comL/pilP) [Pseudomonas aeruginosa strain PA19-3047]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362