Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KSO_RS10890 Genome accession   NC_020272
Coordinates   2280893..2281255 (-) Length   120 a.a.
NCBI ID   WP_003154238.1    Uniprot ID   A0A150FA43
Organism   Bacillus amyloliquefaciens IT-45     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2275893..2286255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS10865 (KSO_011240) flhB 2277418..2278497 (-) 1080 WP_003154232.1 flagellar biosynthesis protein FlhB -
  KSO_RS10870 (KSO_011245) fliR 2278497..2279276 (-) 780 WP_003154233.1 flagellar biosynthetic protein FliR -
  KSO_RS10875 (KSO_011250) fliQ 2279283..2279552 (-) 270 WP_003154234.1 flagellar biosynthesis protein FliQ -
  KSO_RS10880 (KSO_011255) fliP 2279567..2280232 (-) 666 WP_003154235.1 flagellar type III secretion system pore protein FliP -
  KSO_RS10885 (KSO_011260) fliZ 2280225..2280878 (-) 654 WP_003154237.1 flagella biosynthesis regulatory protein FliZ -
  KSO_RS10890 (KSO_011265) pilH 2280893..2281255 (-) 363 WP_003154238.1 chemotaxis protein CheY Machinery gene
  KSO_RS10895 (KSO_011270) fliY 2281282..2282418 (-) 1137 WP_003154239.1 flagellar motor switch phosphatase FliY -
  KSO_RS10900 (KSO_011275) fliM 2282408..2283406 (-) 999 WP_003154240.1 flagellar motor switch protein FliM -
  KSO_RS10905 (KSO_011280) fliL 2283440..2283859 (-) 420 WP_003154241.1 flagellar basal body-associated protein FliL -
  KSO_RS10910 (KSO_011285) - 2283856..2284071 (-) 216 WP_003154243.1 flagellar FlbD family protein -
  KSO_RS10915 (KSO_011290) flgG 2284111..2284887 (-) 777 WP_003154244.1 flagellar basal body rod protein FlgG -
  KSO_RS10920 (KSO_011295) flgD 2284912..2285352 (-) 441 WP_003154247.1 flagellar hook assembly protein FlgD -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13209.53 Da        Isoelectric Point: 4.6805

>NTDB_id=45930 KSO_RS10890 WP_003154238.1 2280893..2281255(-) (pilH) [Bacillus amyloliquefaciens IT-45]
MAHRILIVDDAAFMRMMIKDILVKNGFDVVAEASDGAQAVEKFKEHSPDLVTMDITMPEMDGITALKEIKQIDPQAKIIM
CSAMGQQSMVIDAIQAGAKDFIVKPFQADRVLEAINKTLS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=45930 KSO_RS10890 WP_003154238.1 2280893..2281255(-) (pilH) [Bacillus amyloliquefaciens IT-45]
ATGGCACACAGAATTTTAATTGTAGACGATGCAGCATTTATGAGAATGATGATCAAGGATATTTTAGTGAAGAACGGTTT
TGACGTTGTAGCTGAAGCTTCAGACGGAGCGCAGGCAGTTGAAAAATTCAAAGAGCATTCCCCCGACCTAGTGACAATGG
ATATTACAATGCCTGAAATGGACGGGATTACAGCTCTAAAGGAAATTAAACAGATCGATCCGCAGGCGAAAATCATCATG
TGTTCGGCTATGGGCCAGCAGTCAATGGTTATTGACGCGATTCAGGCCGGCGCAAAAGACTTTATCGTGAAACCGTTCCA
AGCGGACCGCGTGCTTGAAGCCATTAATAAAACATTAAGCTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A150FA43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

38.983

98.333

0.383