Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   KSO_RS10545 Genome accession   NC_020272
Coordinates   2206835..2207266 (-) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens IT-45     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201835..2212266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS10535 (KSO_010910) hexA 2203332..2205917 (-) 2586 WP_003154108.1 DNA mismatch repair protein MutS Machinery gene
  KSO_RS10540 (KSO_010915) cotE 2206036..2206581 (-) 546 WP_003154111.1 outer spore coat protein CotE -
  KSO_RS10545 (KSO_010920) ymcA 2206835..2207266 (-) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  KSO_RS10550 (KSO_010925) miaB 2207269..2208798 (-) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  KSO_RS10555 (KSO_010930) - 2208941..2210119 (-) 1179 WP_131258772.1 glycine C-acetyltransferase -
  KSO_RS10560 (KSO_010935) tdh 2210132..2211178 (-) 1047 WP_015388219.1 L-threonine 3-dehydrogenase -
  KSO_RS10565 (KSO_010940) spoVS 2211438..2211698 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=45926 KSO_RS10545 WP_003154113.1 2206835..2207266(-) (ymcA) [Bacillus amyloliquefaciens IT-45]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=45926 KSO_RS10545 WP_003154113.1 2206835..2207266(-) (ymcA) [Bacillus amyloliquefaciens IT-45]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment