Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   JHW37_RS23135 Genome accession   NZ_CP068238
Coordinates   4936267..4937709 (-) Length   480 a.a.
NCBI ID   WP_023443431.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A39-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4931267..4942709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS23105 (JHW37_23105) - 4931593..4932708 (+) 1116 WP_034078293.1 glycosyltransferase family 4 protein -
  JHW37_RS23110 (JHW37_23110) - 4932701..4933462 (+) 762 WP_053817710.1 DUF2334 domain-containing protein -
  JHW37_RS23115 (JHW37_23115) - 4933459..4934460 (+) 1002 WP_012077124.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  JHW37_RS23120 (JHW37_23120) - 4934435..4934644 (-) 210 WP_053817711.1 hypothetical protein -
  JHW37_RS23125 (JHW37_23125) purU 4934694..4935545 (-) 852 WP_003157637.1 formyltetrahydrofolate deformylase -
  JHW37_RS23130 (JHW37_23130) mvaT 4935806..4936183 (+) 378 WP_012077126.1 histone-like nucleoid-structuring protein MvaT -
  JHW37_RS23135 (JHW37_23135) sbcB 4936267..4937709 (-) 1443 WP_023443431.1 exodeoxyribonuclease I Machinery gene
  JHW37_RS23140 (JHW37_23140) - 4937934..4938671 (+) 738 WP_034078299.1 integral membrane protein -
  JHW37_RS23145 (JHW37_23145) - 4938709..4939506 (+) 798 WP_023443432.1 RDD family protein -
  JHW37_RS23150 (JHW37_23150) - 4939503..4940483 (+) 981 WP_012077129.1 stage II sporulation protein M -
  JHW37_RS23155 (JHW37_23155) - 4940470..4942041 (+) 1572 WP_043102340.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55530.83 Da        Isoelectric Point: 6.1575

>NTDB_id=459249 JHW37_RS23135 WP_023443431.1 4936267..4937709(-) (sbcB) [Pseudomonas aeruginosa strain A39-1]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAHPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPEADGRVSLK
LELLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHRVLDQIHLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLRADPAPLLELSAEELRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRLRTGID
VEACQRRAELLRQRQAAWTEKLALAYSEESFAASEDPEQQLYDGFIGDRDRRLCEQLRRAEPEQLAREQWPFDDIRLQEL
FFRYRARNFPETLSPSERQQWEAFCRNRLSHEEFGAPNTLPAFEAAMEACRQEQGGTLPAVLAAWRDYAGELRRRYALDN

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=459249 JHW37_RS23135 WP_023443431.1 4936267..4937709(-) (sbcB) [Pseudomonas aeruginosa strain A39-1]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGTCGCGACCGCCCGCTGCAGAT
CGCCGGCATCCGCACCGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAATCTCTATTGCCGCCCCAGCGACGACATCC
TGCCGCATCCGATGGCCTGCCTGATCACCGGCATCACCCCGCAGCGCCTGGCCGAGCGGGGGCTCTCCGAGGCCGACTTC
ATGACCCGGGTCCACGCCCAGCTGGCGCACCCGGCGACCTGCGTGGCCGGCTACAACTCGCTGCGCTTCGACGACGAGGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTATGCCCGCGAATGGCAGGGCGGCAACAGTCGCTGGGACCTGA
TCGACATGGTCCGCACCGCCTACGCCCTGCGCCCCGAAGGTATCCAGTGGCCGGAAGCGGACGGTCGCGTATCGCTGAAG
CTGGAACTGCTCACCGCGGCGAATGGCCTGGAGCACGGCCAGGCCCACGACGCGCTGTCCGACGTCCGCGCGACCATCGC
CCTGGCCCGCCTGATCCGCCAGCGCCAGCCACGCCTGTACGACTATCTCTACCAGTTGCGCAGCAAGCACAGGGTGCTCG
ACCAGATCCACCTGCTGCAGCCGCTGGTGCACGTCTCCGGGCGCTTTTCCGCCGAGCGTCATTTCCTCTCCGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTGCGCGCCGACCCCGCGCCGTTGCTGGAGCT
GTCCGCCGAGGAGTTGCGCCGGCGCCTGTATACCCGGCGCGACGAGCTGGCCGAAGGCGAGCTGCCGGTGCCGCTGAAGC
AGATCCAGGTGAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTGTTGCGTGCCGAGGATCGCCTGCGCACAGGCATCGAT
GTCGAGGCCTGCCAGCGGAGAGCCGAGCTGTTGCGCCAGCGGCAGGCTGCCTGGACGGAAAAACTGGCCCTCGCATATAG
CGAGGAAAGTTTCGCCGCCAGCGAAGACCCCGAACAACAGTTGTATGACGGATTTATCGGCGACCGCGACCGGCGCCTTT
GCGAACAGCTGCGTCGCGCCGAACCGGAGCAGTTGGCCAGAGAACAATGGCCGTTCGACGATATCCGCTTGCAGGAATTG
TTCTTCCGTTATCGTGCGCGCAATTTCCCGGAAACTTTAAGTCCCAGCGAGCGACAACAATGGGAGGCGTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATTCGGTGCGCCGAATACTTTGCCGGCCTTCGAGGCGGCAATGGAAGCCTGTCGACAAGAGC
AGGGCGGGACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTATGCCGGGGAACTGCGTCGACGCTATGCGCTGGACAAC
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

50.469

88.75

0.448