Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   JHW37_RS09135 Genome accession   NZ_CP068238
Coordinates   1934077..1936821 (+) Length   914 a.a.
NCBI ID   WP_054080493.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A39-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1929077..1941821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS09115 (JHW37_09115) - 1929712..1930473 (+) 762 WP_053816960.1 class I SAM-dependent methyltransferase -
  JHW37_RS09120 (JHW37_09120) leuB 1930532..1931614 (+) 1083 WP_034078383.1 3-isopropylmalate dehydrogenase -
  JHW37_RS09125 (JHW37_09125) asd 1931684..1932796 (+) 1113 WP_012075055.1 aspartate-semialdehyde dehydrogenase -
  JHW37_RS09130 (JHW37_09130) - 1932898..1933908 (+) 1011 WP_033977034.1 aspartate-semialdehyde dehydrogenase -
  JHW37_RS09135 (JHW37_09135) fimV 1934077..1936821 (+) 2745 WP_054080493.1 motility hub landmark protein FimV Machinery gene
  JHW37_RS09140 (JHW37_09140) truA 1936843..1937700 (+) 858 WP_053816961.1 tRNA pseudouridine(38-40) synthase TruA -
  JHW37_RS09145 (JHW37_09145) - 1937790..1938425 (+) 636 WP_034078388.1 phosphoribosylanthranilate isomerase -
  JHW37_RS09150 (JHW37_09150) accD 1938694..1939566 (+) 873 WP_012075059.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  JHW37_RS09155 (JHW37_09155) folC 1939563..1940852 (+) 1290 WP_053813667.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  JHW37_RS09160 (JHW37_09160) - 1940856..1941515 (+) 660 WP_043103287.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 914 a.a.        Molecular weight: 96003.08 Da        Isoelectric Point: 3.9340

>NTDB_id=459217 JHW37_RS09135 WP_054080493.1 1934077..1936821(+) (fimV) [Pseudomonas aeruginosa strain A39-1]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLSSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRASSAPRAPQ
APSPAPVRTTAPAGSETYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLER
SPREALSQVQAQNQSWRGSRNPAAASAGARQLDATQRSAAGSAPAKVDAPDNLRLVSGEGKASKGADKGGKGDSKAIADT
LAVTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLAAEGQGVAQPGAAQVDAGAAAQAPAAAAPT
PAPAGEAPAAPAQPPVAPPPAPAAETPPAPAAPAPVRTEEPAEASFLDELLANPLWLAVIGGSALLALLVLLMILSRRNA
QKEKDEAAALAAEAGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAASTEKTTAQTSDALGEADIYIAYGRFNQAAELLQN
AIYDEPQRSDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSFSLD
DLSLDHTGHAAGQDAAGQDLDDAFDLSLDDLDGDLGGDEVQADLKSDSGALDDLTLDSDLDLAASAPAEKPADDLDFGLD
FADLAETPVDAKGDGLGDFSLDLDAPEDKLSDDDFLLSLNDDAPAAAPADNGFGLDTEAADEPSLSLPDDFDLSLADEPV
EPAVPAKSEDSFAAQLDEVSAQLDELASNLDEPKNAAPSFSAEDAAIASTLDGESDDDFDFLSGADEAATKLDLARAYID
MGDSEGARDILEEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2745 bp        

>NTDB_id=459217 JHW37_RS09135 WP_054080493.1 1934077..1936821(+) (fimV) [Pseudomonas aeruginosa strain A39-1]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCACGGGTTGGGACT
CGGCGAAATAACCCTGAAGTCGGCGTTGAACCAGCCGCTGGATGCCGAGATCGAGCTGCTCGAAGTCCGCGACCTGAGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAGGAATTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTTACCGAC
CTGAAGTTCACCCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATCCGCGTGACCTCGTCGAAGCCGGTGCAGGAACCCTA
CCTGAACTTCCTCGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAATACACCGTCCTGCTGGATCCGCCGCTGT
ACTCGCCGCAGGCCGCGGCGAGCGCCCCGCAGGCACCGGTCAGCGCGCCGCGGGCGAGCAGCGCTCCACGTGCCCCGCAG
GCGCCGTCCCCGGCCCCGGTGCGGACCACCGCGCCGGCCGGCAGCGAGACCTATCGCACCGTGTCCAACGACACGCTGTG
GGAGATCGCCCAGCGCAACCGTACCGACCGGGTTTCCGTGCCGCAGGCGATGCTCGCCTTCCAGGAACTGAATCCGGGCG
CCTTCGTCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATCCCCACCGAACAACAGATGCTGGAGCGC
TCCCCGCGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGCCAGCGC
CGGCGCCCGGCAATTGGACGCGACCCAGCGCAGCGCCGCCGGTTCGGCGCCGGCCAAGGTCGACGCCCCGGACAACCTGC
GCCTGGTTTCCGGCGAAGGCAAGGCCAGCAAGGGGGCCGACAAGGGCGGCAAGGGTGACAGCAAGGCGATCGCCGACACC
CTGGCGGTGACCAAGGAAAGCCTGGACAGCACCCGTCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGACCTGCAGAG
CCAGCTGGACAAGCTGCAGAAGCTGATCCAGCTGAAAGACGCGCAGTTGGCCAAGCTGCAGGGGCAATTGGCTGCCGAAG
GCCAGGGCGTAGCCCAGCCGGGTGCGGCCCAGGTGGATGCCGGCGCCGCTGCGCAAGCTCCCGCCGCCGCAGCGCCGACC
CCGGCTCCCGCCGGCGAGGCGCCAGCCGCTCCGGCGCAGCCTCCGGTAGCGCCGCCGCCCGCGCCAGCGGCCGAGACCCC
GCCGGCACCAGCCGCACCGGCCCCGGTACGGACGGAAGAACCGGCGGAAGCGAGTTTCCTCGACGAGTTGCTGGCCAATC
CGCTGTGGCTGGCGGTGATCGGCGGTAGCGCGCTGCTGGCCTTGCTGGTCCTGCTGATGATTCTGTCCCGGCGCAATGCG
CAGAAGGAGAAGGACGAGGCTGCGGCCCTGGCGGCGGAAGCCGGCGAGGAACAGGAGGATGCGCTGGACCTGGGAAAGGA
CGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCGGCCGTTGCGGCGTCGACCGAGAAGACCACCGCGC
AGACTTCCGATGCGCTGGGCGAGGCCGATATCTACATCGCCTACGGACGCTTCAACCAGGCCGCCGAACTGCTGCAGAAC
GCCATTTATGACGAGCCGCAGCGCAGCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGATCGCGAAGG
CTTCGCCCGCCAGGAAAACGAACTGCGCGAGATCGGTGGCGCCCAGCCGCAGGTCGAGCAGCTCAAGTCGCGCTACCCGG
CGATGGTGGCGGTGGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAGGACGAACTGGACAGCTTCAGCCTCGAC
GACCTGTCGCTGGACCACACCGGTCATGCGGCCGGGCAGGACGCGGCCGGGCAGGACCTCGACGACGCCTTCGACCTGAG
CCTGGATGACCTCGATGGCGATCTCGGCGGTGACGAGGTGCAGGCCGACCTCAAGTCCGATAGCGGTGCGCTGGACGACC
TGACCCTGGACAGCGATCTCGACCTGGCTGCCTCGGCGCCGGCGGAGAAGCCGGCCGATGACCTCGATTTCGGCCTGGAC
TTCGCCGACCTGGCGGAGACCCCGGTCGACGCCAAGGGCGACGGCCTGGGTGATTTCTCCCTGGACCTCGATGCGCCGGA
AGACAAGCTGTCGGATGACGATTTCCTGCTCTCGCTGAATGACGACGCGCCCGCCGCGGCGCCCGCCGACAACGGGTTCG
GCCTCGACACCGAGGCCGCCGACGAGCCGTCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGACGAACCGGTG
GAACCGGCCGTCCCGGCGAAGAGCGAAGACAGTTTTGCCGCCCAGTTGGACGAGGTGAGTGCGCAGTTGGACGAATTGGC
CAGCAATCTTGACGAGCCGAAGAATGCGGCGCCGAGCTTCTCGGCCGAGGATGCGGCGATCGCCTCGACCCTGGATGGGG
AATCCGACGACGACTTCGATTTCCTTTCCGGCGCCGATGAAGCGGCGACCAAGCTGGATCTGGCGCGTGCCTATATCGAC
ATGGGTGACAGCGAGGGCGCGCGCGATATCCTCGAGGAAGTCCTGGCCGAAGGCAACGACAGCCAGCAGGCGGAAGCCCG
CGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

89.916

52.079

0.468