Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   JHW37_RS03530 Genome accession   NZ_CP068238
Coordinates   720080..722917 (-) Length   945 a.a.
NCBI ID   WP_034079223.1    Uniprot ID   A0A2R3J197
Organism   Pseudomonas aeruginosa strain A39-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715080..727917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JHW37_RS03500 (JHW37_03500) rpsK 715204..715593 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  JHW37_RS03505 (JHW37_03505) rpsD 715610..716230 (+) 621 WP_003152258.1 30S ribosomal protein S4 -
  JHW37_RS03510 (JHW37_03510) - 716253..717254 (+) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  JHW37_RS03515 (JHW37_03515) rplQ 717298..717687 (+) 390 WP_003093672.1 50S ribosomal protein L17 -
  JHW37_RS03520 (JHW37_03520) katA 717969..719417 (+) 1449 WP_012074231.1 catalase KatA -
  JHW37_RS03525 (JHW37_03525) bfr 719546..720010 (+) 465 WP_053816631.1 bacterioferritin -
  JHW37_RS03530 (JHW37_03530) uvrA 720080..722917 (-) 2838 WP_034079223.1 excinuclease ABC subunit UvrA Machinery gene
  JHW37_RS03535 (JHW37_03535) - 723131..724519 (+) 1389 WP_043098854.1 MFS transporter -
  JHW37_RS03540 (JHW37_03540) ssb 724536..725033 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  JHW37_RS03545 (JHW37_03545) - 725122..726552 (-) 1431 WP_053816632.1 isochorismate synthase -
  JHW37_RS03550 (JHW37_03550) pchB 726549..726854 (-) 306 WP_043102697.1 isochorismate lyase PchB -
  JHW37_RS03555 (JHW37_03555) - 726854..727609 (-) 756 WP_053816633.1 thioesterase II family protein -

Sequence

Protein


Download         Length: 945 a.a.        Molecular weight: 104507.14 Da        Isoelectric Point: 6.6074

>NTDB_id=459203 JHW37_RS03530 WP_034079223.1 720080..722917(-) (uvrA) [Pseudomonas aeruginosa strain A39-1]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALALADGIALVAPMDED
EDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYFQM
LGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESTTVREELAKF
LSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLSGRRGEIAAKILKEIRDRLQFLVNVGLDYLTL
DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDI
GPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIVVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITG
VSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEAREFF
DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD
HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMSQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2838 bp        

>NTDB_id=459203 JHW37_RS03530 WP_034079223.1 720080..722917(-) (uvrA) [Pseudomonas aeruginosa strain A39-1]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGACTTTCCGGTTCCGGCAAGTCTTCCCTGGCCTTCGACACGCTCTATGCCGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTATGCCCGGCAATTCCTGTCGATGATGGAAAAGCCCGACGTGGACACCATCGAGGGCCTGTCA
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCGCGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTCCGCCTGCTCTATGCCCGCGTCGGCACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTCGCCCTGCCCGAAGGCAGCAAGCTGATGTTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGTTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAGCTCGA
CGAAGTACCTAAGCTGGACAAGCAGAAGAAGCACAGCATCGACGTGGTGGTGGACCGCTTCAAGGTCCGCGCCGACCTCC
AGCAACGCCTGGCCGAGTCCTTCGAGACCGCCCTCGCCCTGGCCGACGGCATCGCCCTGGTGGCGCCGATGGATGAGGAC
GAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTGGAACCCAA
GCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGCCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACGCGCGGC
GGGTGGTCAATGGCGAGCTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATG
CTCGGCTCGCTGGCCCAGCACTACGGTTTCAGCCTGGAAGAGCCCTTCGACGAGCTCGGCGCCGAGCACCAGAAGGTGGT
GCTCTACGGCTCGGGCCGGGAGAACGTCGACTTCCGCTATCTCAACGACCGCGGCGATATCGTCAAGCGCTCGCACCCGT
TCGAGGGCATCCTGCCGAACCTCGAGCGGCGCTACCGCGAGACCGAGTCGACCACGGTCCGCGAGGAACTCGCCAAGTTC
CTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGAC
ACTGCCGGCGATCACCGCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGCCTCAGCCTGAGCGGCCGCCGTGGCG
AGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAGTTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC
GACCGCAGTGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTGGG
AGTGATGTACATCCTCGACGAACCTTCGATCGGCCTGCACCAGCGCGACAACGAACGCCTGCTCGGCACCCTCACCCACC
TGCGCAACCTCGGCAACACGGTGATAGTGGTCGAGCACGACGAGGACGCCATCCGCCTCGCCGACTACGTCGTCGACATC
GGCCCCGGCGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGACTCGCT
GACCGGCAAGTACCTTTCCGGGCGCAAGAAGATCGTGGTACCGGCCAAGCGCACCCCGCGCGACAAGAAGAAACTGCTGA
AGCTGAAGGGCGCGCGCGGCAACAACCTGCAGAACGTCAACCTGGAGATCCCGGTCGGCCTGTTCACCTGCATCACCGGG
GTGTCCGGCTCGGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGCGACCAC
CCTGGAAGTGGCGCCGTACGATTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTGGATATCGACCAGAGCCCCATCG
GCCGTACCCCGCGCTCCAACCCGGCGACCTACACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG
GCCCGCTCGCGCGGCTACGGTCCCGGCCGTTTCTCGTTCAACGTCAAGGGCGGCCGCTGCGAGGCCTGCCAGGGCGATGG
CGTGATCAAGGTGGAAATGCACTTCCTGCCGGACATCTACGTGCCCTGCGACGTCTGCAAGGGCAAGCGCTACAACCGCG
AGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAGTTCTTC
GACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACGCTGATGGACGTCGGCCTGTCCTATATCAAGCTGGGGCAGAGCGC
GACCACCCTCTCCGGAGGCGAGGCGCAGCGGGTCAAGCTGTCGCGCGAGTTGTCCAAGCGCGATACCGGCAAGACCCTGT
ACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGTCTGCGCGAC
CACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGATCTCGGTCCCGA
GGGCGGCTCCAAGGGCGGCCAGATCATCGCCAACGGCACGCCGGAGCAGGTGGCCGAGATGTCCCAGTCGCACACCGGGC
ACTTCCTCAAGCCGCTGCTGGAACGGGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3J197

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.339

100

0.575
  uvrA Streptococcus pneumoniae TIGR4

57.339

100

0.575
  uvrA Streptococcus pneumoniae D39

57.339

100

0.575