Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV285_RS15900 Genome accession   NZ_CP056321
Coordinates   3155531..3156145 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. RHBSTW-00821     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3150531..3161145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV285_RS15885 (HV285_15895) helD 3150755..3152809 (-) 2055 WP_181626262.1 DNA helicase IV -
  HV285_RS15890 (HV285_15900) - 3152935..3153381 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HV285_RS15895 (HV285_15905) yccS 3153400..3155553 (+) 2154 WP_181626263.1 YccS family putative transporter -
  HV285_RS15900 (HV285_15910) sxy/tfoX 3155531..3156145 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  HV285_RS15905 (HV285_15915) sulA 3156362..3156871 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  HV285_RS15910 (HV285_15920) ompA 3157229..3158287 (+) 1059 WP_016156137.1 porin OmpA -
  HV285_RS15915 (HV285_15925) matP 3158385..3158837 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV285_RS15920 (HV285_15930) - 3159023..3160783 (+) 1761 WP_080858512.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=459183 HV285_RS15900 WP_016152483.1 3155531..3156145(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00821]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459183 HV285_RS15900 WP_016152483.1 3155531..3156145(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00821]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681