Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   I6J13_RS07325 Genome accession   NZ_CP068213
Coordinates   1484662..1486590 (-) Length   642 a.a.
NCBI ID   WP_006270085.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1479662..1491590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS07305 (I6J13_07305) purM 1480636..1481655 (+) 1020 WP_006270098.1 phosphoribosylformylglycinamidine cyclo-ligase -
  I6J13_RS07310 (I6J13_07310) purN 1481652..1482206 (+) 555 WP_037565897.1 phosphoribosylglycinamide formyltransferase -
  I6J13_RS07315 (I6J13_07315) - 1482313..1483020 (+) 708 WP_006270100.1 suppressor of fused domain protein -
  I6J13_RS07320 (I6J13_07320) purH 1483062..1484609 (+) 1548 WP_037565900.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  I6J13_RS07325 (I6J13_07325) lytF 1484662..1486590 (-) 1929 WP_006270085.1 GBS Bsp-like repeat-containing protein Regulator
  I6J13_RS07330 (I6J13_07330) purD 1486786..1488051 (+) 1266 WP_006270102.1 phosphoribosylamine--glycine ligase -
  I6J13_RS07335 (I6J13_07335) purE 1488259..1488750 (+) 492 WP_006270093.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  I6J13_RS07340 (I6J13_07340) purK 1488737..1489828 (+) 1092 WP_006270092.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  I6J13_RS07345 (I6J13_07345) - 1489838..1490065 (+) 228 WP_006270103.1 hypothetical protein -
  I6J13_RS07350 (I6J13_07350) - 1490149..1490508 (+) 360 WP_174842345.1 hypothetical protein -
  I6J13_RS07355 (I6J13_07355) - 1490591..1491526 (+) 936 WP_006269888.1 IS30 family transposase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 71566.20 Da        Isoelectric Point: 8.5233

>NTDB_id=459164 I6J13_RS07325 WP_006270085.1 1484662..1486590(-) (lytF) [Streptococcus constellatus strain FDAARGOS_1156]
MKKYSQLFLLSSALLSVFSAQLTVQASEANNASKSSNPTTLASDVTVNVSGNSVSINYIRSQAQNPYTISHAVWSDENGQ
DDLKWYSASQTSTTVDLSQHSGYGTFHVHTYININGKMVGLNGTTFTLNKPTSQTKITTAGQIGQIHFTRNKDQKNSKIV
HAIWSEENGSDDLNWYDAEQEITKFDFSKHKGYGRYFVDTYENKNGKMIYQSGTTFNLEKPNPTIQTSFPEPGIMDIQIK
NVPETIYKLTVPTWSDKNGQDDLQWYAATKNPDGSYNVRVELKKHNYDTGTYHIHLYGESYVKPEFTGLAGTTVQVRSDQ
LPSEEEQKPLFSVENINQEQGTYTVKTKETSKSKSIQSVRVPIWSTTNQSNIKWYTATDNGDGTFSTTFNIRNHQALSGT
YINHIYVKYKDGSEHSYATDSVSMFAEQIKTKVAVTKRSIYNYEVTVTDAYGDGNIILPTWSEVNGQDDIQWYTATKTGN
GIYKFTIDTQKHTGSGLFHTHVYRNLNGKMIGLTGTSYQVEKPVISFQPNYAAATTYPKGQCTWGAKALAPWAGNYWGNG
GDWATSARRAGFKTGTTPQVGAIICWTDGSYGHVGVVTHVASNTRIQIQEANYAGKQYIGNFRGWFNPHAAGQGVVSYIY
PK

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=459164 I6J13_RS07325 WP_006270085.1 1484662..1486590(-) (lytF) [Streptococcus constellatus strain FDAARGOS_1156]
ATGAAAAAATATAGTCAATTGTTTTTACTATCCAGCGCCCTTTTGAGTGTTTTTTCAGCTCAACTAACAGTTCAAGCCTC
GGAAGCAAATAATGCTTCAAAAAGCTCAAATCCAACAACCCTTGCTAGCGATGTTACTGTCAATGTTTCTGGCAATAGCG
TTTCTATCAACTACATACGTTCACAAGCCCAAAACCCCTACACCATTTCCCATGCTGTTTGGTCTGATGAAAATGGGCAA
GATGACCTTAAATGGTATTCCGCATCTCAAACATCAACAACTGTTGATTTGAGCCAACATTCTGGGTACGGTACTTTCCA
TGTCCATACATATATCAACATCAATGGAAAAATGGTCGGTTTAAATGGAACGACTTTCACTCTGAATAAACCTACTAGTC
AAACAAAAATTACGACAGCTGGACAGATTGGGCAAATTCATTTTACACGCAATAAAGATCAAAAAAATTCTAAAATTGTT
CATGCCATTTGGTCTGAAGAAAATGGTAGTGATGATCTCAACTGGTACGATGCTGAACAGGAAATAACTAAATTTGACTT
TTCCAAACACAAGGGTTATGGGAGATATTTTGTAGATACTTATGAAAATAAAAATGGTAAAATGATTTACCAGTCAGGTA
CCACTTTTAACCTTGAAAAACCAAATCCTACTATCCAAACTAGTTTTCCAGAACCTGGTATTATGGATATTCAGATCAAA
AATGTCCCTGAAACAATCTATAAACTAACTGTTCCAACTTGGTCTGATAAAAACGGACAGGATGATCTTCAATGGTATGC
AGCTACTAAAAATCCTGATGGAAGCTACAATGTTAGAGTTGAGCTAAAAAAACACAACTATGACACAGGAACTTATCACA
TTCATCTTTACGGAGAAAGCTATGTCAAACCAGAGTTTACTGGCTTAGCTGGAACTACGGTACAAGTTCGTTCCGATCAA
TTACCTTCGGAAGAAGAGCAAAAGCCATTATTCTCTGTTGAAAATATCAATCAAGAACAAGGAACATATACGGTCAAAAC
TAAGGAAACTTCAAAATCCAAATCCATTCAATCCGTTCGCGTTCCTATTTGGAGTACTACAAATCAGAGTAATATCAAAT
GGTACACAGCCACTGACAATGGAGACGGAACTTTTTCAACAACCTTTAATATCCGCAATCATCAGGCTTTGTCTGGAACC
TATATCAATCATATTTATGTAAAATATAAAGACGGTAGTGAGCATAGTTATGCAACAGATTCGGTTAGCATGTTCGCAGA
ACAGATAAAAACGAAAGTAGCTGTCACGAAACGCTCGATCTACAATTATGAAGTAACAGTGACAGATGCTTATGGAGATG
GAAATATCATCCTGCCTACCTGGTCTGAAGTCAACGGGCAAGATGATATCCAGTGGTACACAGCTACTAAAACTGGAAAT
GGTATCTACAAGTTCACTATTGATACACAAAAACACACTGGTAGCGGGCTTTTCCACACACATGTCTACCGCAATCTCAA
CGGTAAAATGATTGGACTAACAGGTACGAGCTATCAAGTAGAGAAACCTGTTATATCCTTTCAACCCAATTATGCTGCTG
CAACTACTTATCCAAAAGGTCAATGCACTTGGGGTGCTAAAGCTCTAGCACCTTGGGCTGGAAATTATTGGGGAAATGGT
GGCGATTGGGCTACTAGTGCCAGACGTGCTGGTTTTAAAACAGGAACAACTCCACAAGTCGGAGCCATTATTTGTTGGAC
AGATGGTAGTTACGGGCACGTTGGAGTCGTCACTCACGTGGCCTCAAACACCCGTATTCAGATTCAAGAGGCAAACTACG
CTGGGAAACAGTACATTGGCAACTTTCGTGGCTGGTTTAATCCCCATGCAGCTGGGCAAGGAGTAGTCAGTTACATTTAT
CCAAAATAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(535-612)

GBS Bsp-like repeat (GBS_Bsp-like)

(230-300)

GBS Bsp-like repeat (GBS_Bsp-like)

(440-516)

GBS Bsp-like repeat (GBS_Bsp-like)

(67-125)

GBS Bsp-like repeat (GBS_Bsp-like)

(333-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

44.045

82.399

0.363