Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   KSO_RS08570 Genome accession   NC_020272
Coordinates   1707966..1709456 (+) Length   496 a.a.
NCBI ID   WP_003153405.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1702966..1714456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS08550 (KSO_008805) serA 1703620..1705197 (-) 1578 WP_003153401.1 phosphoglycerate dehydrogenase -
  KSO_RS08555 (KSO_008810) - 1705686..1706258 (+) 573 WP_003153402.1 ECF transporter S component -
  KSO_RS08560 (KSO_008815) - 1706398..1706646 (-) 249 WP_003153403.1 ferredoxin -
  KSO_RS08565 (KSO_008820) - 1706915..1707973 (+) 1059 WP_003153404.1 helix-turn-helix domain-containing protein -
  KSO_RS08570 (KSO_008825) recS 1707966..1709456 (+) 1491 WP_003153405.1 RecQ family ATP-dependent DNA helicase Machinery gene
  KSO_RS08575 (KSO_008830) - 1709471..1710058 (+) 588 WP_014305323.1 CPBP family intramembrane glutamic endopeptidase -
  KSO_RS08580 (KSO_008835) - 1710036..1710806 (+) 771 WP_015388058.1 LysM peptidoglycan-binding domain-containing protein -
  KSO_RS08585 (KSO_008840) - 1710875..1711333 (+) 459 WP_007409443.1 YpbF family protein -
  KSO_RS08590 (KSO_008845) - 1711420..1712208 (+) 789 WP_015388059.1 metallophosphoesterase -
  KSO_RS08595 (KSO_008850) - 1712360..1712944 (+) 585 WP_003153412.1 genetic competence negative regulator -
  KSO_RS08600 (KSO_008855) gudB 1713105..1714379 (+) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56030.09 Da        Isoelectric Point: 6.3781

>NTDB_id=45916 KSO_RS08570 WP_003153405.1 1707966..1709456(+) (recS) [Bacillus amyloliquefaciens IT-45]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTDDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIRKALLSYFDESYEPEGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=45916 KSO_RS08570 WP_003153405.1 1707966..1709456(+) (recS) [Bacillus amyloliquefaciens IT-45]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAGGATACGATCGCCATGCTTCCGACCGGCGGGGGGAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCAAAAGGA
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATTCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAACGTTCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCGGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGGCCTTTCAGACAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACTGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCTGATAATG
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCCGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGTACCAATGCGTTCGGAATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCTGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGATCTGGAAGGCATTTTGGCCGTCATACGGGATGCCGGTACGGATGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAAGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAACCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAAAAGCGCTGCTGTCTTATTTTGATGAATCGTATGAGCCTGAAGGCCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGGAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685

Multiple sequence alignment