Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   I6J13_RS05845 Genome accession   NZ_CP068213
Coordinates   1207574..1209550 (-) Length   658 a.a.
NCBI ID   WP_006269971.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1202574..1214550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS05820 (I6J13_05820) eeP 1203430..1204701 (-) 1272 WP_006269996.1 RIP metalloprotease Regulator
  I6J13_RS05825 (I6J13_05825) - 1204854..1205657 (-) 804 WP_003070759.1 phosphatidate cytidylyltransferase -
  I6J13_RS05830 (I6J13_05830) - 1205666..1206415 (-) 750 WP_006269972.1 isoprenyl transferase -
  I6J13_RS05835 (I6J13_05835) yajC 1206554..1206889 (-) 336 WP_006269993.1 preprotein translocase subunit YajC -
  I6J13_RS05840 (I6J13_05840) - 1206993..1207481 (-) 489 WP_003070763.1 prolyl-tRNA synthetase associated domain-containing protein -
  I6J13_RS05845 (I6J13_05845) recP/tkt 1207574..1209550 (-) 1977 WP_006269971.1 transketolase Machinery gene
  I6J13_RS05850 (I6J13_05850) ulaG 1209692..1210783 (-) 1092 WP_003070767.1 L-ascorbate 6-phosphate lactonase -
  I6J13_RS05855 (I6J13_05855) - 1210945..1212615 (-) 1671 WP_006269999.1 transcription antiterminator -
  I6J13_RS05860 (I6J13_05860) - 1212823..1213524 (-) 702 WP_006269976.1 L-ribulose-5-phosphate 4-epimerase -
  I6J13_RS05865 (I6J13_05865) - 1213527..1214387 (-) 861 WP_006270002.1 L-ribulose-5-phosphate 3-epimerase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71479.78 Da        Isoelectric Point: 4.9772

>NTDB_id=459136 I6J13_RS05845 WP_006269971.1 1207574..1209550(-) (recP/tkt) [Streptococcus constellatus strain FDAARGOS_1156]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYDLFTKQMRINPEVPNWINRDRFVLSAGHGSMLLYALLHLSGFKD
VTMEEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISMATGFAQAERFLAAKYNREGYNIFDHYTYVICGDGDLMEG
VSSEAASYAGLQKLDKLIVLYDSNDINLDGETKDSFTESVRARYDAYGWHTALVKDGTDLEAINAAIEAAKVSGKPSLIE
VKTVIGYGSPNKQGTNAVHGAPLGAEEVAATRKALTWDYEPFEIPEEVYEDYRVNVAERGKAAYDAWVKLVEAYKQAYPD
LADEVAAVIAGQDPVEIKPEDFPVVETGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDDAHRLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AIPNLTVFRPADARETQAAWYLALKSKTTPTALVLTRQNLTVEAETDFNKVAKGAYVVYETVGGFDTILLASGSEVNLAV
AAAKELEVQGEKVRVVSVPSTDIFDAQDVAYKEEILPNAVRRRVAIEMAATQSWYKYVGLDGSVIGIDKFGASAPAAKVM
KEYGFTVEHIVEVVKNLK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=459136 I6J13_RS05845 WP_006269971.1 1207574..1209550(-) (recP/tkt) [Streptococcus constellatus strain FDAARGOS_1156]
ATGTCAAATTTATCTGTCAATGCCATTCGTTTTTTAGGAATTGATGCCATTGAAAAATCAAAATCTGGTCACCCAGGTGT
TGTCATGGGCGCAGCTCCGATGGCTTATGACTTGTTTACCAAGCAAATGCGCATCAATCCAGAAGTGCCAAATTGGATCA
ATCGCGATCGTTTTGTTTTGTCAGCAGGGCATGGGTCTATGTTGCTCTATGCTTTGCTTCATTTATCAGGTTTTAAAGAT
GTCACAATGGAAGAAATCAAGAACTTCCGTCAATGGGGTTCTAAAACGCCTGGGCATCCCGAATTTGGACATACTGCTGG
TGTAGATGCGACAACTGGTCCACTTGGTCAAGGAATTTCTATGGCAACTGGTTTTGCACAAGCAGAACGTTTTTTAGCAG
CAAAATACAATCGTGAAGGCTATAATATCTTTGACCACTATACGTATGTTATCTGTGGTGATGGGGATTTGATGGAAGGT
GTATCTAGCGAAGCAGCTTCTTACGCTGGTCTGCAAAAATTAGATAAACTCATCGTTCTCTATGACTCCAACGATATTAA
TCTGGATGGAGAAACGAAGGATTCCTTTACAGAAAGCGTTCGGGCACGTTATGATGCTTATGGTTGGCATACTGCTTTGG
TTAAAGATGGGACAGACTTAGAAGCAATCAATGCAGCGATTGAAGCTGCAAAAGTTTCTGGCAAACCTTCCTTAATTGAA
GTGAAAACAGTGATTGGTTATGGTTCACCAAACAAACAAGGGACTAATGCCGTTCATGGAGCTCCTCTTGGTGCAGAAGA
AGTAGCCGCTACTCGCAAAGCTCTTACATGGGATTACGAACCGTTTGAAATTCCTGAAGAAGTCTACGAAGATTATCGGG
TCAATGTTGCCGAACGTGGGAAAGCTGCTTATGATGCTTGGGTAAAACTTGTTGAAGCATACAAACAAGCCTATCCTGAC
TTAGCTGATGAAGTAGCTGCTGTTATTGCGGGACAAGATCCAGTTGAGATCAAGCCAGAAGATTTCCCAGTAGTAGAAAC
AGGTTTCTCGCAAGCTACTCGTAATTCTAGTCAAGATGCTTTGAATGCAGCAGCTAAAGTTCTTCCAACTTTCCTTGGCG
GCTCTGCTGACCTAGCTCATTCTAATATGACTTATATCAAAGAAGATGGCTTGCAAGATGATGCCCATCGCCTTAACCGC
AACATTCAATTCGGTGTACGTGAATTTGCTATGGGAACTATTTTAAATGGTATGGCACTTCACGGAGGGCTTCGTGTTTA
CGGTGGTACATTCTTTGTGTTCTCAGATTATGTCAAAGCGGCTATTCGTTTATCAGCTCTTCAAGGCTTGCCTGTAACCT
ATGTCTTTACCCATGATTCAATTGCAGTTGGTGAGGATGGTCCAACTCATGAACCAATTGAGCACTTAGCAGGACTTCGT
GCTATTCCGAATCTCACTGTTTTCCGTCCAGCGGATGCGCGTGAAACACAGGCGGCTTGGTACTTGGCACTGAAAAGTAA
AACAACTCCAACGGCGTTGGTTCTTACTCGTCAAAACTTGACTGTTGAAGCTGAAACTGACTTTAACAAGGTAGCAAAAG
GCGCTTATGTGGTGTATGAAACAGTAGGTGGTTTTGATACAATTCTTCTTGCATCTGGTTCTGAAGTCAACTTAGCTGTT
GCAGCTGCAAAAGAGTTGGAAGTACAAGGGGAAAAAGTTCGCGTTGTCAGTGTACCATCAACAGACATCTTTGATGCACA
AGACGTTGCTTACAAAGAAGAAATTCTACCAAATGCAGTCCGCCGCCGTGTTGCCATTGAAATGGCTGCAACCCAATCTT
GGTACAAATATGTTGGACTTGACGGTTCTGTTATCGGTATTGATAAATTCGGTGCTTCTGCTCCAGCAGCTAAAGTAATG
AAAGAGTACGGTTTCACAGTTGAACATATCGTTGAGGTTGTGAAAAACTTGAAATAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-334)

Transketolase, C-terminal domain (Transketolase_C)

(543-650)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

79.909

99.848

0.798