Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV294_RS16390 Genome accession   NZ_CP056301
Coordinates   3350796..3351392 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain RHBSTW-00843     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3345796..3356392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV294_RS16375 (HV294_16375) helD 3346004..3348058 (-) 2055 WP_181467236.1 DNA helicase IV -
  HV294_RS16380 (HV294_16380) - 3348183..3348629 (+) 447 WP_002898425.1 YccF domain-containing protein -
  HV294_RS16385 (HV294_16385) yccS 3348647..3350782 (+) 2136 WP_009308302.1 YccS family putative transporter -
  HV294_RS16390 (HV294_16390) sxy/tfoX 3350796..3351392 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  HV294_RS16395 (HV294_16395) sulA 3351741..3352250 (+) 510 WP_023282343.1 SOS-induced cell division inhibitor SulA -
  HV294_RS16400 (HV294_16400) ompA 3352603..3353673 (+) 1071 WP_002898408.1 porin OmpA -
  HV294_RS16405 (HV294_16405) matP 3353805..3354257 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  HV294_RS16410 (HV294_16410) - 3354443..3356200 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=459112 HV294_RS16390 WP_004150836.1 3350796..3351392(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00843]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=459112 HV294_RS16390 WP_004150836.1 3350796..3351392(-) (sxy/tfoX) [Klebsiella pneumoniae strain RHBSTW-00843]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCAGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51