Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   I6J13_RS02005 Genome accession   NZ_CP068213
Coordinates   413997..415067 (+) Length   356 a.a.
NCBI ID   WP_003069090.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 408997..420067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J13_RS01985 (I6J13_01985) guaA 409316..410875 (-) 1560 WP_006269476.1 glutamine-hydrolyzing GMP synthase -
  I6J13_RS01990 (I6J13_01990) - 411017..411715 (+) 699 WP_006269535.1 GntR family transcriptional regulator -
  I6J13_RS01995 (I6J13_01995) - 411834..412166 (+) 333 WP_003069097.1 putative DNA-binding protein -
  I6J13_RS02000 (I6J13_02000) ffh 412227..413801 (+) 1575 WP_006269548.1 signal recognition particle protein -
  I6J13_RS02005 (I6J13_02005) xerS 413997..415067 (+) 1071 WP_003069090.1 tyrosine recombinase XerS Machinery gene
  I6J13_RS02010 (I6J13_02010) ucpA 415129..415926 (-) 798 WP_006269588.1 SDR family oxidoreductase UcpA -
  I6J13_RS02015 (I6J13_02015) - 416279..417268 (-) 990 WP_006269515.1 lipoate--protein ligase -
  I6J13_RS02020 (I6J13_02020) lpdA 417283..418986 (-) 1704 WP_006269569.1 dihydrolipoyl dehydrogenase -
  I6J13_RS02025 (I6J13_02025) - 419018..420061 (-) 1044 WP_006269553.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41221.33 Da        Isoelectric Point: 9.4251

>NTDB_id=459101 I6J13_RS02005 WP_003069090.1 413997..415067(+) (xerS) [Streptococcus constellatus strain FDAARGOS_1156]
MKRELLLERIEKLKTILPWYVLEYYQSKLTVPYSFTTLYEYLKEYNRFFQWILDSGIADVSQIAEIPLSVLENMTKKDME
SFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGTETEQFLNYIDEEYPKSLSNRALSSFDKNKERDLAIIALLLASGIRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKPYLEAYLEIRAKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=459101 I6J13_RS02005 WP_003069090.1 413997..415067(+) (xerS) [Streptococcus constellatus strain FDAARGOS_1156]
ATGAAGCGTGAACTACTTTTAGAAAGAATTGAAAAACTAAAGACTATTCTACCCTGGTATGTTTTGGAATATTATCAATC
TAAATTAACTGTTCCATACAGTTTTACAACCTTATATGAATATCTTAAAGAATACAATCGTTTTTTTCAGTGGATTTTAG
ACTCTGGAATTGCTGATGTCTCACAAATTGCAGAAATTCCTTTATCGGTGTTGGAAAATATGACTAAAAAAGATATGGAA
TCATTTATCCTTTACCTACGGGAACGACCGTTGCTTAATGCTAATACCACGCAAAATGGAGTATCTCAAACAACTATTAA
CCGCACTCTTTCAGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGAGAGCCTTATTTTT
ATCGTAATGTTATGAAAAAAGTGTCCACTAAGAAAAAGAAAGAAACTTTAGCTGCACGAGCTGAAAATATTAAACAAAAG
CTCTTTTTAGGCACGGAAACTGAACAATTTTTGAATTATATTGATGAAGAATATCCTAAAAGTTTATCTAATCGCGCCCT
CTCCTCTTTCGACAAAAATAAAGAGCGAGATTTGGCAATTATAGCATTGCTTCTTGCATCTGGTATTCGCCTATCCGAGG
CGGTCAATCTTGATTTGAAGGACCTTAACCTAAAAATGATGGTCATTGAAGTGACTCGTAAGGGCGGAAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAACCCTACTTGGAAGCCTATCTTGAGATTCGGGCCAAACGCTATAAAGCTGAAAAATC
AGACACTGCCCTATTTTTGACAGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATGCCAGTACTCAAGTTACAGACCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

88.483

100

0.885