Detailed information NTG0459091

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HV298_RS20550
• Genome accession: NZ_CP056297
• Coordinates: 4207009..4207809 (+)
• Length: 266 a.a.
• NCBI ID: WP_032414527.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain RHBSTW-00852
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4202009..4212809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV298_RS20515 (HV298_20515)	gspH	4202165..4202680 (+)	516	WP_004183045.1	type II secretion system minor pseudopilin GspH	-
HV298_RS20520 (HV298_20520)	gspI	4202677..4203042 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
HV298_RS20525 (HV298_20525)	gspJ	4203039..4203635 (+)	597	WP_064146108.1	type II secretion system minor pseudopilin GspJ	-
HV298_RS20530 (HV298_20530)	gspK	4203632..4204618 (+)	987	WP_021467522.1	type II secretion system minor pseudopilin GspK	-
HV298_RS20535 (HV298_20535)	gspL	4204605..4205798 (+)	1194	WP_020804558.1	type II secretion system protein GspL	-
HV298_RS20540 (HV298_20540)	-	4205791..4206276 (+)	486	WP_004151943.1	type II secretion system protein M	-
HV298_RS20545 (HV298_20545)	-	4206266..4207012 (+)	747	WP_021441215.1	type II secretion system protein N	-
HV298_RS20550 (HV298_20550)	pilD	4207009..4207809 (+)	801	WP_032414527.1	A24 family peptidase	Machinery gene
HV298_RS20555 (HV298_20555)	hrpB	4207857..4210286 (-)	2430	WP_042939508.1	ATP-dependent helicase HrpB	-
HV298_RS20560 (HV298_20560)	thpR	4210359..4210895 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
HV298_RS20565 (HV298_20565)	sfsA	4210895..4211611 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
HV298_RS20570 (HV298_20570)	dksA	4211774..4212229 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=459091 HV298_RS20550 WP_032414527.1 4207009..4207809(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00852]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=459091 HV298_RS20550 WP_032414527.1 4207009..4207809(+) (pilD) [Klebsiella pneumoniae strain RHBSTW-00852]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGTATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCAGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACTCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421