Detailed information NTG0459054

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6I34_RS17150
• Genome accession: NZ_CP068155
• Coordinates: 3312851..3313843 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081561.1
• Uniprot ID: -
• Organism: Escherichia coli strain FDAARGOS_1077
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3307851..3318843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6I34_RS17120 (I6I34_17145)	ispD	3307912..3308622 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
I6I34_RS17125 (I6I34_17150)	ispF	3308622..3309101 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I6I34_RS17130 (I6I34_17155)	truD	3309098..3310147 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
I6I34_RS17135 (I6I34_17160)	surE	3310128..3310889 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I6I34_RS17140 (I6I34_17165)	pcm	3310883..3311509 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I6I34_RS17145 (I6I34_17170)	nlpD	3311694..3312788 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I6I34_RS17150 (I6I34_17175)	rpoS	3312851..3313843 (+)	993	WP_000081561.1	RNA polymerase sigma factor RpoS	Regulator
I6I34_RS17155 (I6I34_17180)	ygbN	3313937..3315299 (-)	1363	Protein_3214	GntP family transporter	-
I6I34_RS17160 (I6I34_17185)	ygbM	3315388..3316164 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
I6I34_RS17165 (I6I34_17190)	ygbL	3316169..3316807 (-)	639	WP_001278994.1	aldolase	-
I6I34_RS17170 (I6I34_17195)	otnK	3316804..3318066 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37956.80 Da
• Isoelectric Point: 4.5597

>NTDB_id=459054 I6I34_RS17150 WP_000081561.1 3312851..3313843(+) (rpoS) [Escherichia coli strain FDAARGOS_1077]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQPDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=459054 I6I34_RS17150 WP_000081561.1 3312851..3313843(+) (rpoS) [Escherichia coli strain FDAARGOS_1077]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACCGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712