Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CJS3_RS05860 Genome accession   NC_017281
Coordinates   1104585..1105535 (+) Length   316 a.a.
NCBI ID   WP_011049891.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni S3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1090630..1110347 1104585..1105535 within 0


Gene organization within MGE regions


Location: 1090630..1110347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJS3_RS05795 (CJS3_1174) pglI 1090630..1091559 (-) 930 WP_002867212.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  CJS3_RS05800 (CJS3_1175) pglH 1091552..1092631 (-) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  CJS3_RS05805 (CJS3_1176) pglK 1092628..1094322 (-) 1695 WP_002867213.1 ABC-type lipopolysaccharide transporter PglK -
  CJS3_RS05810 (CJS3_1177) galE 1094316..1095302 (-) 987 WP_002867214.1 UDP-glucose 4-epimerase GalE -
  CJS3_RS05815 (CJS3_1178) - 1095361..1096155 (-) 795 WP_002860221.1 3'-5' exonuclease -
  CJS3_RS05820 (CJS3_1179) waaC 1096222..1097250 (+) 1029 WP_011049885.1 lipopolysaccharide heptosyltransferase I -
  CJS3_RS05825 (CJS3_1180) htrB 1097240..1098127 (+) 888 WP_002867215.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  CJS3_RS05830 (CJS3_1181) - 1098124..1099674 (+) 1551 WP_002867216.1 glycosyltransferase -
  CJS3_RS05835 (CJS3_1182) - 1099643..1100530 (-) 888 WP_011049886.1 glycosyltransferase family 2 protein -
  CJS3_RS05840 (CJS3_1183) - 1100523..1101731 (-) 1209 WP_011049887.1 glycosyltransferase family 2 protein -
  CJS3_RS05845 (CJS3_1184) - 1101809..1102471 (-) 663 WP_139889607.1 glycosyltransferase family 2 protein -
  CJS3_RS09775 - 1102506..1102784 (-) 279 WP_050783121.1 glycosyltransferase family 2 protein -
  CJS3_RS05850 (CJS3_1186) - 1102777..1103663 (-) 887 Protein_1127 glycosyltransferase -
  CJS3_RS05855 (CJS3_1188) waaV 1103717..1104526 (-) 810 WP_011049890.1 glycosyltransferase family 2 protein -
  CJS3_RS05860 (CJS3_1189) waaF 1104585..1105535 (+) 951 WP_011049891.1 lipopolysaccharide heptosyltransferase II Regulator
  CJS3_RS05865 (CJS3_1190) - 1105521..1106285 (-) 765 WP_002884483.1 glycosyltransferase family 25 protein -
  CJS3_RS05870 (CJS3_1191) gmhA 1106285..1106845 (-) 561 WP_002869619.1 D-sedoheptulose 7-phosphate isomerase -
  CJS3_RS05875 (CJS3_1192) rfaE1 1106842..1108227 (-) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  CJS3_RS05880 (CJS3_1193) rfaD 1108220..1109173 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  CJS3_RS05885 (CJS3_1194) gmhB 1109174..1109735 (-) 562 Protein_1134 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  CJS3_RS05890 (CJS3_1195) - 1109816..1110118 (+) 303 WP_002852762.1 cytochrome c -
  CJS3_RS05895 (CJS3_1196) ccoS 1110141..1110347 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36213.76 Da        Isoelectric Point: 10.2878

>NTDB_id=45904 CJS3_RS05860 WP_011049891.1 1104585..1105535(+) (waaF) [Campylobacter jejuni subsp. jejuni S3]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKDLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLNLACMPCMQKTCPLKHHKCMKDLKPEVIVKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=45904 CJS3_RS05860 WP_011049891.1 1104585..1105535(+) (waaF) [Campylobacter jejuni subsp. jejuni S3]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAATCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACAAAATTTACTCAAACCTCACC
TTGGCAAAATGAAAACGCAACATTAGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTGTAAAAGCGATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.652

99.051

0.918

Multiple sequence alignment