Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV311_RS15970 Genome accession   NZ_CP056269
Coordinates   3281924..3282538 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. RHBSTW-00881     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3276924..3287538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV311_RS15955 (HV311_15955) helD 3277148..3279202 (-) 2055 WP_019076416.1 DNA helicase IV -
  HV311_RS15960 (HV311_15960) - 3279328..3279774 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HV311_RS15965 (HV311_15965) yccS 3279793..3281946 (+) 2154 WP_191220165.1 YccS family putative transporter -
  HV311_RS15970 (HV311_15970) sxy/tfoX 3281924..3282538 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  HV311_RS15975 (HV311_15975) sulA 3282755..3283264 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  HV311_RS15980 (HV311_15980) ompA 3283622..3284680 (+) 1059 WP_075144918.1 porin OmpA -
  HV311_RS15985 (HV311_15985) matP 3284779..3285231 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV311_RS15990 (HV311_15990) - 3285417..3287177 (+) 1761 WP_191220166.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=459017 HV311_RS15970 WP_016152483.1 3281924..3282538(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00881]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=459017 HV311_RS15970 WP_016152483.1 3281924..3282538(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00881]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGTGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACTCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681