Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV316_RS17265 Genome accession   NZ_CP056260
Coordinates   3551229..3551852 (-) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain RHBSTW-00898     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3546229..3556852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV316_RS17250 (HV316_17250) helD 3546464..3548518 (-) 2055 WP_015367425.1 DNA helicase IV -
  HV316_RS17255 (HV316_17255) - 3548642..3549088 (+) 447 WP_015367426.1 YccF domain-containing protein -
  HV316_RS17260 (HV316_17260) yccS 3549106..3551241 (+) 2136 WP_015367427.1 YccS family putative transporter -
  HV316_RS17265 (HV316_17265) sxy/tfoX 3551229..3551852 (-) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  HV316_RS17270 (HV316_17270) sulA 3552302..3552811 (+) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  HV316_RS17275 (HV316_17275) ompA 3553164..3554216 (+) 1053 WP_080473199.1 porin OmpA -
  HV316_RS17280 (HV316_17280) matP 3554308..3554760 (-) 453 WP_015367432.1 macrodomain Ter protein MatP -
  HV316_RS17285 (HV316_17285) - 3554946..3556703 (+) 1758 WP_032705615.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=458969 HV316_RS17265 WP_026612357.1 3551229..3551852(-) (sxy/tfoX) [Klebsiella aerogenes strain RHBSTW-00898]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=458969 HV316_RS17265 WP_026612357.1 3551229..3551852(-) (sxy/tfoX) [Klebsiella aerogenes strain RHBSTW-00898]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493