Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   I6I87_RS10220 Genome accession   NZ_CP068109
Coordinates   2269290..2269652 (-) Length   120 a.a.
NCBI ID   WP_201664915.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2264290..2274652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS10200 (I6I87_10200) - 2265388..2266722 (-) 1335 WP_201664908.1 hypothetical protein -
  I6I87_RS10205 (I6I87_10205) - 2266979..2267197 (-) 219 WP_201664910.1 hypothetical protein -
  I6I87_RS10210 (I6I87_10210) - 2267294..2268328 (-) 1035 Protein_1991 methyl-accepting chemotaxis protein -
  I6I87_RS10215 (I6I87_10215) - 2268748..2269284 (-) 537 WP_201664912.1 chemotaxis protein CheW -
  I6I87_RS10220 (I6I87_10220) pilH 2269290..2269652 (-) 363 WP_201664915.1 response regulator Machinery gene
  I6I87_RS10225 (I6I87_10225) pilG 2269888..2270274 (-) 387 WP_050324978.1 twitching motility response regulator PilG Regulator
  I6I87_RS10230 (I6I87_10230) - 2270811..2271998 (+) 1188 WP_201664917.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13589.66 Da        Isoelectric Point: 5.6153

>NTDB_id=458901 I6I87_RS10220 WP_201664915.1 2269290..2269652(-) (pilH) [Moraxella osloensis strain FDAARGOS_1130]
MAKILVVDDSPSEMAKFRDILTRHQHEVIEAHTGEDGIQKANEFFPDVILMDVVMPEMNGFQATRKLTRDPKTSHIPVVI
ISTKNQETDRVWGKRQGARDYLGKPITEEALITVICAVME

Nucleotide


Download         Length: 363 bp        

>NTDB_id=458901 I6I87_RS10220 WP_201664915.1 2269290..2269652(-) (pilH) [Moraxella osloensis strain FDAARGOS_1130]
ATGGCCAAAATCTTAGTAGTTGATGATTCACCATCAGAAATGGCAAAATTTCGAGATATTTTGACTCGTCATCAGCACGA
AGTCATTGAAGCGCATACAGGCGAGGATGGAATTCAAAAAGCCAATGAGTTTTTCCCCGATGTGATTTTGATGGATGTGG
TCATGCCAGAGATGAACGGCTTCCAAGCAACCCGCAAACTAACCCGTGACCCGAAAACCAGTCATATCCCTGTTGTCATC
ATCAGTACTAAAAATCAAGAAACTGACCGGGTATGGGGCAAGCGCCAAGGCGCACGAGATTATCTAGGTAAGCCGATTAC
AGAAGAAGCCTTAATCACTGTAATCTGCGCCGTGATGGAGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

40

95.833

0.383