Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   I6I87_RS05940 Genome accession   NZ_CP068109
Coordinates   1335356..1335979 (-) Length   207 a.a.
NCBI ID   WP_065252670.1    Uniprot ID   -
Organism   Moraxella osloensis strain FDAARGOS_1130     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330356..1340979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I87_RS05920 (I6I87_05920) kdsB 1331109..1331903 (-) 795 WP_201664174.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I6I87_RS05925 (I6I87_05925) lpxK 1331925..1333043 (-) 1119 WP_201664175.1 tetraacyldisaccharide 4'-kinase -
  I6I87_RS05930 (I6I87_05930) msbA 1333043..1334806 (-) 1764 WP_201664176.1 lipid A export permease/ATP-binding protein MsbA -
  I6I87_RS05935 (I6I87_05935) - 1334870..1335325 (-) 456 WP_201664177.1 ExbD/TolR family protein -
  I6I87_RS05940 (I6I87_05940) exbB 1335356..1335979 (-) 624 WP_065252670.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I6I87_RS05945 (I6I87_05945) - 1336030..1337181 (-) 1152 WP_201664178.1 ParB/RepB/Spo0J family partition protein -
  I6I87_RS05950 (I6I87_05950) - 1337360..1338160 (-) 801 WP_159374711.1 ParA family protein -
  I6I87_RS05955 (I6I87_05955) rsmG 1338262..1338909 (-) 648 WP_201664179.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  I6I87_RS05960 (I6I87_05960) sthA 1338909..1340603 (-) 1695 WP_227715476.1 Si-specific NAD(P)(+) transhydrogenase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22609.90 Da        Isoelectric Point: 5.9103

>NTDB_id=458884 I6I87_RS05940 WP_065252670.1 1335356..1335979(-) (exbB) [Moraxella osloensis strain FDAARGOS_1130]
MWELVKAGGWLMWPIVLCSILMLIIIIERAIKLKVSTVTPAHLREQLMQHLIEQGDIDRESLENVKLNSPLGDILAAGLM
NRQHGIDSMTMHMENRASIAIHQLEKHINMLGTIGAIAPLLGLLGTVLGIISSFLAITEGAMQDPTMLAAGVSQALITTA
GGMLVAIPAVMAYRIFQRRIIDINAAFEQEAGLMMQELLDNGLITPR

Nucleotide


Download         Length: 624 bp        

>NTDB_id=458884 I6I87_RS05940 WP_065252670.1 1335356..1335979(-) (exbB) [Moraxella osloensis strain FDAARGOS_1130]
ATGTGGGAATTAGTTAAAGCAGGCGGTTGGTTGATGTGGCCCATTGTCCTATGTTCGATTTTGATGTTGATTATCATCAT
TGAGCGCGCGATAAAACTTAAAGTCAGTACAGTGACACCCGCCCATCTGCGTGAACAATTGATGCAGCATTTGATTGAGC
AGGGCGATATTGATCGTGAATCGCTTGAGAATGTCAAACTCAATTCGCCTTTGGGTGATATCCTTGCTGCAGGACTCATG
AATCGCCAGCATGGGATTGATTCAATGACCATGCATATGGAAAATCGCGCCAGTATCGCCATCCACCAATTAGAAAAACA
TATCAATATGTTGGGTACCATCGGTGCTATCGCGCCATTGTTGGGTCTTCTAGGTACGGTACTGGGGATTATTTCATCCT
TCTTAGCCATTACCGAAGGCGCAATGCAAGATCCGACCATGCTGGCAGCTGGCGTATCGCAAGCGCTGATTACCACAGCA
GGGGGTATGCTGGTTGCGATACCTGCGGTGATGGCGTACCGTATTTTTCAGCGCCGTATCATTGATATTAATGCGGCGTT
TGAACAAGAAGCGGGTTTGATGATGCAAGAACTACTGGACAATGGTCTAATCACGCCTCGTTAA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

49.215

92.271

0.454