Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV330_RS15695 Genome accession   NZ_CP056238
Coordinates   3190956..3191570 (-) Length   204 a.a.
NCBI ID   WP_181501880.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00935     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3185956..3196570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV330_RS15680 (HV330_15680) helD 3186180..3188234 (-) 2055 WP_103848625.1 DNA helicase IV -
  HV330_RS15685 (HV330_15685) - 3188360..3188806 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HV330_RS15690 (HV330_15690) yccS 3188825..3190978 (+) 2154 WP_181501879.1 YccS family putative transporter -
  HV330_RS15695 (HV330_15695) sxy/tfoX 3190956..3191570 (-) 615 WP_181501880.1 TfoX/Sxy family DNA transformation protein Regulator
  HV330_RS15700 (HV330_15700) sulA 3191788..3192297 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  HV330_RS15705 (HV330_15705) ompA 3192655..3193713 (+) 1059 WP_103848624.1 porin OmpA -
  HV330_RS15710 (HV330_15710) matP 3193803..3194255 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV330_RS15715 (HV330_15715) - 3194441..3196201 (+) 1761 WP_032936291.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23265.66 Da        Isoelectric Point: 8.5943

>NTDB_id=458857 HV330_RS15695 WP_181501880.1 3190956..3191570(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00935]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVAYGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPESGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458857 HV330_RS15695 WP_181501880.1 3190956..3191570(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00935]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCTATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAATCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686