Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   CJM1_RS07030 Genome accession   NC_017280
Coordinates   1380457..1381638 (-) Length   393 a.a.
NCBI ID   WP_014517122.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni M1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1375457..1386638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1_RS07000 (CJM1_1409) - 1375999..1376340 (+) 342 WP_002784057.1 hypothetical protein -
  CJM1_RS07005 (CJM1_1410) flgM 1376403..1376600 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  CJM1_RS07010 (CJM1_1411) - 1376645..1377079 (+) 435 WP_002826016.1 flagellar protein FlgN -
  CJM1_RS07015 (CJM1_1412) flgK 1377089..1378915 (+) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  CJM1_RS07020 (CJM1_1413) - 1378932..1379696 (+) 765 WP_002877433.1 TIGR02757 family protein -
  CJM1_RS07025 (CJM1_1414) - 1379700..1380464 (+) 765 WP_002867032.1 TSUP family transporter -
  CJM1_RS07030 (CJM1_1415) ctsF 1380457..1381638 (-) 1182 WP_014517122.1 type II secretion system F family protein Machinery gene
  CJM1_RS07035 (CJM1_1416) ctsE 1381635..1383194 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  CJM1_RS07040 (CJM1_1417) ctsX 1383184..1383771 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  CJM1_RS07045 (CJM1_1418) ctsP 1383775..1384383 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  CJM1_RS07050 (CJM1_1419) ctsD 1384376..1385788 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CJM1_RS07055 (CJM1_1420) ctsR 1385766..1386077 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45790.39 Da        Isoelectric Point: 9.0775

>NTDB_id=45885 CJM1_RS07030 WP_014517122.1 1380457..1381638(-) (ctsF) [Campylobacter jejuni subsp. jejuni M1]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMYSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=45885 CJM1_RS07030 WP_014517122.1 1380457..1381638(-) (ctsF) [Campylobacter jejuni subsp. jejuni M1]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGTATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987

Multiple sequence alignment