Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6J12_RS09985 Genome accession   NZ_CP068060
Coordinates   2063239..2064012 (+) Length   257 a.a.
NCBI ID   WP_020999415.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058239..2069012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS09965 (I6J12_09965) mreD 2058985..2059485 (+) 501 WP_003037058.1 rod shape-determining protein MreD -
  I6J12_RS09970 (I6J12_09970) pcsB 2059595..2060818 (+) 1224 WP_003036998.1 peptidoglycan hydrolase PcsB -
  I6J12_RS09975 (I6J12_09975) - 2060951..2061919 (+) 969 WP_003037009.1 ribose-phosphate diphosphokinase -
  I6J12_RS09980 (I6J12_09980) - 2062074..2063261 (+) 1188 WP_003036950.1 pyridoxal phosphate-dependent aminotransferase -
  I6J12_RS09985 (I6J12_09985) recO 2063239..2064012 (+) 774 WP_020999415.1 DNA repair protein RecO Machinery gene
  I6J12_RS09990 (I6J12_09990) plsX 2064009..2065007 (+) 999 WP_003036916.1 phosphate acyltransferase PlsX -
  I6J12_RS09995 (I6J12_09995) - 2065004..2065249 (+) 246 WP_003036910.1 acyl carrier protein -
  I6J12_RS10000 (I6J12_10000) purC 2065407..2066114 (+) 708 WP_003036932.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30025.38 Da        Isoelectric Point: 5.3725

>NTDB_id=458844 I6J12_RS09985 WP_020999415.1 2063239..2064012(+) (recO) [Streptococcus anginosus strain FDAARGOS_1155]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVIQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFAMAYATYVVALADTSIQDNEIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGISLNFHECCFCHRVG
LPFDFSFTYNGVLCPEHYGKDERRSHLDPNIPYLLDQFQAVQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLEDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=458844 I6J12_RS09985 WP_020999415.1 2063239..2064012(+) (recO) [Streptococcus anginosus strain FDAARGOS_1155]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTCCTCTATAATCGTAATTTCCGAGAAAATGATAAGCTGGTCAAAATTTT
CACAGAGCAGGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCAGTTATCCAACCATTGG
TAGTGGCAGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATTAATCATGATTTGTTTGCAATGGCTTATGCGACTTATGTGGTAGCTCTGGCAGACACCAGTATTCAGGATAATGA
AATAGATTCGGCGCTCTTTGCTTTTTTGCAAAAAACATTAGAATTGATGGAGCAGGGCTTGGATTATGAGGTACTAACTA
ATATTTTTGAAATTCAAATTTTGTCGCGTTTTGGGATTTCTTTGAATTTCCATGAATGCTGCTTTTGCCACCGTGTAGGG
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCCCTGAGCATTATGGAAAAGATGAGAGACGGAGTCATTT
GGATCCCAACATTCCTTACTTATTAGACCAATTTCAAGCGGTTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATTTAAAGCCCAAAAAATTT
ATTGATTCTCTGGAAGACTGGGGAGAAATTTTAAAAAACAAGGAGTCAAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

75.294

99.222

0.747