Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   CJM1_RS06510 Genome accession   NC_017280
Coordinates   1274875..1275843 (+) Length   322 a.a.
NCBI ID   WP_002898677.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni M1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1269875..1280843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1_RS06485 cdsA 1270786..1271510 (-) 725 Protein_1250 phosphatidate cytidylyltransferase -
  CJM1_RS06490 (CJM1_1306) - 1271519..1271857 (-) 339 WP_002855905.1 hypothetical protein -
  CJM1_RS06495 (CJM1_1307) - 1271859..1273166 (-) 1308 WP_014517085.1 NFACT family protein -
  CJM1_RS06500 (CJM1_1308) mobA 1273228..1273803 (+) 576 WP_002866768.1 molybdenum cofactor guanylyltransferase -
  CJM1_RS06505 (CJM1_1309) pldA 1273800..1274789 (+) 990 WP_002866769.1 phospholipase A -
  CJM1_RS06510 (CJM1_1310) ceuB 1274875..1275843 (+) 969 WP_002898677.1 ABC transporter permease Machinery gene
  CJM1_RS06515 (CJM1_1311) ceuC 1275836..1276774 (+) 939 WP_002866771.1 iron chelate uptake ABC transporter family permease subunit -
  CJM1_RS06520 (CJM1_1312) ceuD 1276771..1277526 (+) 756 WP_002866772.1 ABC transporter ATP-binding protein -
  CJM1_RS06525 (CJM1_1313) ceuB 1277539..1278531 (+) 993 WP_002866773.1 enterochelin ABC transporter substrate-binding protein CeuB -
  CJM1_RS06530 (CJM1_1314) - 1278687..1278908 (+) 222 WP_002866774.1 hypothetical protein -
  CJM1_RS06535 (CJM1_1315) - 1278909..1279190 (+) 282 WP_002866775.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CJM1_RS06545 (CJM1_1317) - 1279552..1280106 (-) 555 WP_002855904.1 membrane protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35411.32 Da        Isoelectric Point: 9.6678

>NTDB_id=45882 CJM1_RS06510 WP_002898677.1 1274875..1275843(+) (ceuB) [Campylobacter jejuni subsp. jejuni M1]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=45882 CJM1_RS06510 WP_002898677.1 1274875..1275843(+) (ceuB) [Campylobacter jejuni subsp. jejuni M1]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATG
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994


Multiple sequence alignment