Detailed information NTG0045882

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: KSO_RS04880
• Genome accession: NC_020272
• Coordinates: 964711..965841 (+)
• Length: 376 a.a.
• NCBI ID: WP_015387807.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens IT-45
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 959711..970841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KSO_RS04850 (KSO_005040)	-	959931..960917 (-)	987	WP_015387802.1	Gfo/Idh/MocA family protein	-
KSO_RS04855 (KSO_005045)	-	961097..962257 (+)	1161	WP_015387803.1	AI-2E family transporter	-
KSO_RS04860 (KSO_005050)	-	962349..963179 (+)	831	WP_031306544.1	undecaprenyl-diphosphate phosphatase	-
KSO_RS20400 (KSO_005055)	-	963557..963820 (-)	264	WP_015387805.1	hypothetical protein	-
KSO_RS04875 (KSO_005060)	-	964189..964392 (-)	204	WP_015387806.1	hypothetical protein	-
KSO_RS04880 (KSO_005065)	rapC	964711..965841 (+)	1131	WP_015387807.1	Rap family tetratricopeptide repeat protein	Regulator
KSO_RS20550 (KSO_005070)	-	965976..966101 (+)	126	WP_015387808.1	hypothetical protein	-
KSO_RS20405	-	966157..966341 (-)	185	Protein_988	hypothetical protein	-
KSO_RS04890 (KSO_005085)	-	967093..967413 (+)	321	WP_015387811.1	hypothetical protein	-
KSO_RS04895 (KSO_005090)	-	967466..968107 (-)	642	WP_003152172.1	cupin domain-containing protein	-
KSO_RS04900 (KSO_005095)	hmpA	968325..969500 (+)	1176	WP_015387812.1	NO-inducible flavohemoprotein	-
KSO_RS04905 (KSO_005100)	-	969643..970488 (+)	846	WP_003152176.1	glucosaminidase domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44378.80 Da
• Isoelectric Point: 6.5102

>NTDB_id=45882 KSO_RS04880 WP_015387807.1 964711..965841(+) (rapC) [Bacillus amyloliquefaciens IT-45]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLEKIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYEQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQLGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide

• Length: 1131 bp

>NTDB_id=45882 KSO_RS04880 WP_015387807.1 964711..965841(+) (rapC) [Bacillus amyloliquefaciens IT-45]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTCATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTGGAAAAAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTACTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAATTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCTATGCATCAC
GTAAAGCAAGCACTCGATATTTACGAGCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTATTCGTCATCTCTGG
GAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCTCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTAGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCTGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGTAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAATTGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAATC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (193-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.591	100	0.449
rapF	Bacillus subtilis subsp. subtilis str. 168	40.106	100	0.404