Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV336_RS15820 Genome accession   NZ_CP056232
Coordinates   3273080..3273694 (-) Length   204 a.a.
NCBI ID   WP_181508947.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHBSTW-00965     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3268080..3278694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV336_RS15805 (HV336_15765) helD 3268304..3270358 (-) 2055 WP_181508943.1 DNA helicase IV -
  HV336_RS15810 (HV336_15770) - 3270484..3270930 (+) 447 WP_181508944.1 YccF domain-containing protein -
  HV336_RS15815 (HV336_15775) yccS 3270949..3273102 (+) 2154 WP_181508946.1 YccS family putative transporter -
  HV336_RS15820 (HV336_15780) sxy/tfoX 3273080..3273694 (-) 615 WP_181508947.1 TfoX/Sxy family DNA transformation protein Regulator
  HV336_RS15825 (HV336_15785) sulA 3273912..3274421 (+) 510 WP_181508948.1 SOS-induced cell division inhibitor SulA -
  HV336_RS15830 (HV336_15790) ompA 3274779..3275837 (+) 1059 WP_181508949.1 porin OmpA -
  HV336_RS15835 (HV336_15795) - 3275883..3276977 (-) 1095 Protein_3119 ISL3 family transposase -
  HV336_RS15840 (HV336_15800) matP 3277244..3277696 (-) 453 WP_003831992.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23152.55 Da        Isoelectric Point: 8.6049

>NTDB_id=458811 HV336_RS15820 WP_181508947.1 3273080..3273694(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00965]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNTPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPAARRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458811 HV336_RS15820 WP_181508947.1 3273080..3273694(-) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-00965]
ATGAAAGAACTTTCTTATGCAAGGATCTATAAGTCGCAGGAATATCTGGCTTCTCTGGGTACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGCGAGTTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATACTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCGCTGTGGCAAAACCAGCAGCAGCTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
AAAGGAAAAACAGAGTCGCTTTGCCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTTTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGGCGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCGCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.137

100

0.681