Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CJM1_RS05615 Genome accession   NC_017280
Coordinates   1093300..1094250 (+) Length   316 a.a.
NCBI ID   WP_002866164.1    Uniprot ID   Q9ALT6
Organism   Campylobacter jejuni subsp. jejuni M1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1088300..1099250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJM1_RS05590 (CJM1_1124) - 1088658..1089671 (-) 1014 WP_041176748.1 hypothetical protein -
  CJM1_RS05595 (CJM1_1125) - 1089742..1090515 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  CJM1_RS05600 (CJM1_1126) wlaTB 1090508..1091464 (+) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  CJM1_RS05605 (CJM1_1127) wlaTC 1091461..1092420 (+) 960 WP_012006735.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  CJM1_RS05610 (CJM1_1128) - 1092423..1093241 (-) 819 WP_014517064.1 glycosyltransferase family 2 protein -
  CJM1_RS05615 (CJM1_1129) waaF 1093300..1094250 (+) 951 WP_002866164.1 lipopolysaccharide heptosyltransferase II Regulator
  CJM1_RS05620 (CJM1_1130) - 1094302..1095801 (+) 1500 WP_002877116.1 MBOAT family O-acyltransferase -
  CJM1_RS05625 (CJM1_1131) - 1095811..1096926 (+) 1116 WP_002877117.1 hypothetical protein -
  CJM1_RS05630 (CJM1_1132) gmhA 1096930..1097490 (-) 561 WP_002877119.1 D-sedoheptulose 7-phosphate isomerase -
  CJM1_RS05635 (CJM1_1133) rfaE1 1097487..1098872 (-) 1386 WP_014517065.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36378.95 Da        Isoelectric Point: 10.3102

>NTDB_id=45878 CJM1_RS05615 WP_002866164.1 1093300..1094250(+) (waaF) [Campylobacter jejuni subsp. jejuni M1]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=45878 CJM1_RS05615 WP_002866164.1 1093300..1094250(+) (waaF) [Campylobacter jejuni subsp. jejuni M1]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ALT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.249

99.051

0.934

Multiple sequence alignment