Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6J12_RS00890 Genome accession   NZ_CP068060
Coordinates   180002..180604 (-) Length   200 a.a.
NCBI ID   WP_003036440.1    Uniprot ID   I0SDJ5
Organism   Streptococcus anginosus strain FDAARGOS_1155     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 175002..185604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J12_RS00875 (I6J12_00875) nadE 175216..176040 (+) 825 WP_003036452.1 ammonia-dependent NAD(+) synthetase -
  I6J12_RS00880 (I6J12_00880) pepC 176188..177525 (+) 1338 WP_003036473.1 aminopeptidase C -
  I6J12_RS00885 (I6J12_00885) pbp1a 177841..180009 (-) 2169 WP_003036437.1 penicillin-binding protein PBP1A -
  I6J12_RS00890 (I6J12_00890) recU 180002..180604 (-) 603 WP_003036440.1 Holliday junction resolvase RecU Machinery gene
  I6J12_RS00895 (I6J12_00895) - 180674..181201 (+) 528 WP_003036467.1 DUF1273 domain-containing protein -
  I6J12_RS00900 (I6J12_00900) gpsB 181271..181612 (+) 342 WP_003036439.1 cell division regulator GpsB -
  I6J12_RS00910 (I6J12_00910) - 182049..183203 (+) 1155 WP_020999480.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  I6J12_RS00915 (I6J12_00915) - 183216..184718 (+) 1503 WP_003036475.1 cell division site-positioning protein MapZ family protein -
  I6J12_RS00920 (I6J12_00920) ahpC 184821..185387 (+) 567 WP_003036466.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23103.74 Da        Isoelectric Point: 10.0398

>NTDB_id=458760 I6J12_RS00890 WP_003036440.1 180002..180604(-) (recU) [Streptococcus anginosus strain FDAARGOS_1155]
MVNYPHKVPSRNSLRLPKKKSVDFANRGMSFEKMINETNDYYLSHDLAVIHKKPTPIQIVKVDYPRRSRAKIVEAYFRQA
STTDYSGVYQGHYIDFEAKETHQKASMPMKNFHAHQIKHMEQVVKQGGICFVLLHFSALKLTYLLPAPYLINFFKIDKGK
NSMPLDYIQKHGYSISQNGLPSIPYLEIIQQNLLGGKTNE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=458760 I6J12_RS00890 WP_003036440.1 180002..180604(-) (recU) [Streptococcus anginosus strain FDAARGOS_1155]
ATGGTCAACTATCCACATAAAGTTCCCTCTCGAAATTCATTAAGACTTCCCAAAAAGAAGTCCGTTGACTTTGCGAATCG
GGGAATGTCGTTTGAAAAAATGATCAATGAAACGAATGATTATTATCTTAGTCACGATTTAGCGGTCATTCACAAGAAAC
CAACCCCTATTCAGATTGTAAAAGTGGATTATCCCAGACGTAGTCGGGCAAAAATTGTTGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCTGGTGTCTATCAAGGACATTATATAGATTTTGAAGCAAAAGAAACACATCAAAAGGCTTCCAT
GCCGATGAAAAATTTTCATGCTCATCAAATCAAGCACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TGCACTTTTCAGCCTTAAAATTGACATATCTACTTCCTGCTCCTTATTTAATTAACTTCTTCAAGATTGACAAGGGGAAA
AATTCCATGCCACTTGACTACATTCAAAAGCATGGATATTCTATCTCACAGAATGGTCTTCCTAGCATTCCGTATCTTGA
AATCATTCAACAAAATTTACTAGGTGGTAAAACAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SDJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.249

100

0.505