Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I6J14_RS10295 Genome accession   NZ_CP068057
Coordinates   2062228..2062836 (-) Length   202 a.a.
NCBI ID   WP_003052199.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2057228..2067836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS10280 (I6J14_10280) nadE 2057694..2058518 (+) 825 WP_003052203.1 ammonia-dependent NAD(+) synthetase -
  I6J14_RS10285 (I6J14_10285) pepC 2058698..2060029 (+) 1332 WP_115253075.1 aminopeptidase C -
  I6J14_RS10290 (I6J14_10290) pbp1a 2060076..2062241 (-) 2166 WP_115253074.1 penicillin-binding protein PBP1A -
  I6J14_RS10295 (I6J14_10295) recU 2062228..2062836 (-) 609 WP_003052199.1 Holliday junction resolvase RecU Machinery gene
  I6J14_RS10300 (I6J14_10300) - 2062917..2063432 (+) 516 WP_115253073.1 DUF1273 domain-containing protein -
  I6J14_RS10305 (I6J14_10305) gpsB 2063554..2063880 (+) 327 WP_003052194.1 cell division regulator GpsB -
  I6J14_RS10315 (I6J14_10315) - 2064325..2065479 (+) 1155 WP_003052190.1 class I SAM-dependent RNA methyltransferase -
  I6J14_RS10320 (I6J14_10320) - 2065493..2066974 (+) 1482 WP_115253072.1 cell division site-positioning protein MapZ family protein -
  I6J14_RS10325 (I6J14_10325) - 2067088..2067570 (-) 483 WP_003052185.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23250.85 Da        Isoelectric Point: 9.9489

>NTDB_id=458735 I6J14_RS10295 WP_003052199.1 2062228..2062836(-) (recU) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MVNYPHNLIRQKAPSVPKQSKQNKVGFANRGMSFEAAINATNDYYLSRQIAVIHKKPTPIQIVKVDYPKRSRAKIIEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMAAVVEQNGICFVLLHFSTLKETYYLPAQALIAFYQID
KGNKSMPLDYIRKHGFKIVIGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=458735 I6J14_RS10295 WP_003052199.1 2062228..2062836(-) (recU) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGGTCAACTACCCTCATAATCTTATTCGACAAAAAGCACCTTCCGTGCCAAAGCAATCAAAACAAAATAAGGTAGGCTT
TGCCAATCGCGGCATGTCTTTTGAAGCAGCTATCAACGCGACAAATGATTATTATTTGTCGCGGCAAATTGCTGTTATTC
ATAAAAAACCTACCCCCATCCAAATTGTCAAAGTGGATTACCCTAAACGCAGTCGTGCGAAAATCATTGAAGCGTACTTT
AGACAAGCTTCAACGACAGATTATTCTGGGGTTTACAAGGGGCATTATATTGATTTTGAGGCTAAGGAAACCAGACAAAA
AACAGCCATGCCTATGAAAAATTTTCATCTCCATCAGATTGAGCACATGGCAGCTGTTGTGGAACAAAATGGAATTTGCT
TTGTCTTACTTCACTTTTCAACATTGAAAGAAACCTACTATCTGCCTGCTCAGGCTCTTATTGCTTTTTATCAGATTGAT
AAGGGGAACAAATCAATGCCCCTCGATTATATCAGAAAACATGGCTTTAAGATAGTTATTGGAGCCTTTCCACAAGTCCC
TTATCTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5