Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6J14_RS09565 Genome accession   NZ_CP068057
Coordinates   1904608..1907433 (+) Length   941 a.a.
NCBI ID   WP_115253124.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1899608..1912433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS09535 (I6J14_09535) - 1900507..1900827 (+) 321 WP_142758264.1 hypothetical protein -
  I6J14_RS09540 (I6J14_09540) rpsF 1901373..1901663 (+) 291 WP_002983117.1 30S ribosomal protein S6 -
  I6J14_RS09545 (I6J14_09545) ssbA 1901685..1902176 (+) 492 WP_003052678.1 single-stranded DNA-binding protein Machinery gene
  I6J14_RS09550 (I6J14_09550) rpsR 1902294..1902533 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  I6J14_RS09555 (I6J14_09555) - 1902670..1903329 (-) 660 WP_115245696.1 DUF1129 domain-containing protein -
  I6J14_RS09560 (I6J14_09560) - 1903461..1904405 (-) 945 WP_003052672.1 magnesium transporter CorA family protein -
  I6J14_RS09565 (I6J14_09565) uvrA 1904608..1907433 (+) 2826 WP_115253124.1 excinuclease ABC subunit UvrA Machinery gene
  I6J14_RS09570 (I6J14_09570) - 1907924..1908673 (-) 750 WP_236593270.1 excalibur calcium-binding domain-containing protein -
  I6J14_RS09575 (I6J14_09575) - 1909042..1910115 (+) 1074 WP_115276466.1 Xaa-Pro peptidase family protein -
  I6J14_RS09580 (I6J14_09580) - 1910149..1910616 (+) 468 WP_003052653.1 deaminase -
  I6J14_RS09585 (I6J14_09585) efp 1910704..1911261 (+) 558 WP_002993230.1 elongation factor P -
  I6J14_RS09590 (I6J14_09590) - 1911307..1911696 (+) 390 WP_003052647.1 Asp23/Gls24 family envelope stress response protein -
  I6J14_RS09595 (I6J14_09595) nusB 1911689..1912138 (+) 450 WP_003052643.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103890.17 Da        Isoelectric Point: 6.2810

>NTDB_id=458728 I6J14_RS09565 WP_115253124.1 1904608..1907433(+) (uvrA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MQDKLIIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCINGHGAITASSVEQIVEQVLALPERTRMQILAPIVRRKK
GQHKTVFEKIQKDGYVRVRVDGDIFDVTEVPELSKSKMHNIEVVIDRLVNKDSIRSRLFDSIEAALRLGDGYVVIDTMDG
SELLFSEHYSCPVCGFTIPELEPRLFSFNAPFGSCPTCDGLGIKLEVDLDLVVPDPSKTLREGALAPWNPISSNYYPTML
EQAMASFGVDMDTPFEALTEEERDLVLYGSGDREFHFHYVNDFGGERNIDIPFEGVVTNVHRRYHETNSDYTRNVMRGYM
NELTCATCHGYRLNDQALCVHVGGEKGPHIGQISELSIADHLQLLEGLELTENESAIAKPIVKEIHDRLTFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLKKMRDLGNTLIVVEHDEDTMMQADWLI
DVGPGAGEFGGEIIASGTPKQVARNKKSITGQYLSGKKFIPVPLERRSGNGRFIEIKGAAQNNLQHLDVRFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLHRNTDKPGKYQSISGIEHIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNIAEVLDMTVDDALVFF
SAIPKIARKIQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLERFVD
DGNTVLVIEHNLDVIKSADHIIDLGPEGGVGGGQIIATGTPEEVAEAKESYTGHYLKVKLL

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=458728 I6J14_RS09565 WP_115253124.1 1904608..1907433(+) (uvrA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGCAAGATAAATTAATTATTCATGGGGCAAGAGCCCACAATTTAAAAAATATTGACGTGGAAATTCCACGAGACAAATT
AGTTGTCGTGACAGGGTTATCAGGTTCAGGAAAATCTAGTCTAGCCTTTGATACTATTTATGCGGAAGGGCAACGTCGTT
ACGTAGAAAGTTTATCAGCTTACGCTAGGCAATTCTTGGGTAATATGGAAAAACCAGATGTGGATTCCATTGACGGTCTT
AGCCCTGCTATTTCCATTGACCAAAAAACCACCAGTAAGAACCCTCGCTCAACGGTTGGTACGGTTACGGAAATCAATGA
TTATTTACGTCTACTATATGCGCGTGTAGGCACACCTTACTGTATCAATGGGCATGGTGCTATCACGGCGTCTTCTGTGG
AGCAAATTGTTGAACAGGTCTTGGCCCTCCCTGAACGGACACGAATGCAGATTTTAGCTCCTATTGTTCGTCGGAAGAAG
GGGCAACACAAAACAGTTTTTGAGAAAATTCAAAAAGACGGCTATGTCCGTGTGCGCGTTGACGGGGATATTTTTGACGT
GACAGAAGTGCCAGAGTTGTCCAAAAGTAAGATGCATAACATTGAGGTGGTTATTGACCGTCTGGTTAATAAGGATAGCA
TTCGCAGTCGATTATTTGATTCCATTGAAGCAGCTTTAAGGCTGGGAGATGGTTATGTCGTCATTGATACTATGGATGGC
AGTGAATTGCTCTTTTCTGAGCACTATTCTTGTCCTGTCTGTGGGTTTACGATTCCTGAATTGGAGCCAAGACTCTTCTC
CTTTAATGCGCCGTTCGGCTCTTGTCCAACCTGTGATGGGCTGGGAATTAAACTGGAAGTGGATTTGGATTTGGTTGTTC
CTGACCCAAGTAAGACGTTGAGAGAAGGAGCTTTGGCGCCTTGGAATCCTATTTCCTCCAATTATTACCCAACCATGCTT
GAGCAAGCTATGGCGAGTTTTGGGGTGGATATGGATACACCTTTTGAGGCCTTGACTGAGGAAGAAAGAGATTTAGTTCT
TTATGGTTCAGGGGACCGAGAATTTCATTTTCACTATGTGAATGATTTTGGTGGTGAGCGGAACATTGATATTCCTTTTG
AAGGGGTTGTGACCAATGTTCATCGCCGTTATCACGAAACTAATAGTGATTATACGCGCAATGTGATGCGTGGTTATATG
AACGAATTGACCTGTGCGACTTGTCATGGTTACCGTTTGAATGACCAAGCTTTGTGTGTGCATGTGGGTGGCGAAAAAGG
ACCTCATATTGGTCAAATTTCAGAATTATCTATTGCCGACCACTTGCAGTTGTTGGAAGGATTGGAACTCACAGAAAATG
AAAGTGCCATTGCTAAACCGATTGTCAAAGAAATCCATGACCGTCTGACATTCTTAAATAATGTGGGACTGAATTATCTG
ACCTTGTCACGAGCTGCTGGGACTTTATCAGGTGGTGAAAGTCAACGAATCAGGTTGGCAACACAAATTGGTTCTAACCT
ATCAGGGGTGCTCTATATTTTGGATGAGCCTTCTATTGGATTGCATCAAAGAGACAATGACCGTTTGATTGAAAGTCTGA
AAAAGATGCGTGATTTGGGTAATACCTTAATTGTGGTAGAACACGATGAAGACACCATGATGCAAGCGGATTGGCTGATT
GATGTGGGGCCAGGGGCAGGTGAGTTCGGTGGAGAAATTATTGCCTCTGGAACGCCGAAACAAGTGGCTAGGAATAAAAA
ATCCATCACAGGTCAATATTTGTCTGGTAAAAAATTCATTCCAGTGCCTTTAGAGCGCCGTTCTGGTAATGGCCGATTCA
TTGAAATAAAAGGAGCAGCACAGAACAATCTTCAACACCTTGATGTTAGATTCCCTCTCGGCAAATTTATTGCTGTTACA
GGGGTCTCGGGTTCCGGTAAGTCTACCTTGGTTAATAGTATTTTGAAAAAGGCTGTCGCTCAGAAACTTCATCGCAATAC
CGACAAGCCTGGGAAGTATCAGTCTATTTCTGGTATTGAACATATTGAACGGTTGATTGACATCGATCAAAGTCCGATTG
GGAGGACGCCGCGCTCAAATCCAGCAACTTATACAGGGGTCTTTGATGATATTCGAGACTTGTTTGCTCAAACCAATGAA
GCTAAGATTCGTGGCTACAAAAAAGGACGTTTCTCTTTTAATGTCAAGGGTGGGCGTTGTGAAGCTTGTTCAGGTGATGG
GATTATCAAGATTGAAATGCACTTTTTGCCAGATGTTTATGTGCCATGTGAGGTTTGTCACGGCAGGCGGTATAATTCTG
AAACACTTGAAGTGCATTACAAAGGAAAAAATATCGCAGAAGTCCTTGATATGACTGTGGATGATGCCTTGGTATTCTTC
TCTGCTATTCCTAAAATTGCTCGAAAAATTCAAACGATTAAGGATGTTGGACTTGGTTATGTGACCTTAGGTCAACCAGC
TACCACTCTCTCTGGGGGAGAAGCACAGCGGATGAAGTTGGCTAGTGAATTGCACAAGCGGTCGACAGGAAAGAGTCTGT
ATATCTTGGACGAACCAACGACTGGCTTGCATACAGATGATATCGCAAGGCTTTTGAAGGTATTAGAACGCTTTGTAGAC
GATGGCAATACGGTTCTTGTGATTGAGCATAACTTGGATGTTATTAAGTCTGCCGACCATATCATTGACTTAGGGCCAGA
AGGCGGTGTTGGTGGAGGTCAGATTATTGCGACGGGGACACCAGAAGAGGTTGCTGAAGCCAAAGAAAGTTATACTGGTC
ATTATTTGAAAGTCAAATTATTATAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

85.532

99.894

0.854
  uvrA Streptococcus pneumoniae TIGR4

85.532

99.894

0.854
  uvrA Streptococcus pneumoniae D39

85.532

99.894

0.854