Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   I6J14_RS09060 Genome accession   NZ_CP068057
Coordinates   1800664..1802373 (+) Length   569 a.a.
NCBI ID   WP_115253150.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795664..1807373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS09035 (I6J14_09035) - 1796707..1797234 (+) 528 WP_037585149.1 5-formyltetrahydrofolate cyclo-ligase -
  I6J14_RS09040 (I6J14_09040) - 1797231..1797905 (+) 675 WP_003052927.1 rhomboid family intramembrane serine protease -
  I6J14_RS09045 (I6J14_09045) hasC 1798069..1798971 (-) 903 WP_003052925.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  I6J14_RS09050 (I6J14_09050) - 1799003..1800019 (-) 1017 WP_003052923.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  I6J14_RS09055 (I6J14_09055) rcrR 1800222..1800671 (+) 450 WP_003052921.1 MarR family transcriptional regulator Regulator
  I6J14_RS09060 (I6J14_09060) rcrP 1800664..1802373 (+) 1710 WP_115253150.1 ABC transporter ATP-binding protein Regulator
  I6J14_RS09065 (I6J14_09065) - 1802373..1804157 (+) 1785 WP_115253149.1 ABC transporter ATP-binding protein -
  I6J14_RS09070 (I6J14_09070) - 1804276..1805043 (+) 768 WP_003052915.1 epoxyqueuosine reductase QueH -
  I6J14_RS09075 (I6J14_09075) - 1805152..1805598 (+) 447 WP_115253148.1 dUTP diphosphatase -
  I6J14_RS09080 (I6J14_09080) radA 1805681..1807042 (+) 1362 WP_037585033.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63258.99 Da        Isoelectric Point: 6.9008

>NTDB_id=458719 I6J14_RS09060 WP_115253150.1 1800664..1802373(+) (rcrP) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MLKEAILRYKWYTLGSLIMIIGVVASSLLQPHYLKDVLSAVIQNNQGKIYNVGILLLIIALMGLISGAVNTILAAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDINQIQNLVMMLFQVLFRLPILFIGAFIMAVQTLPDLWWVIVLMV
ILIGLIMVLVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNLFIGYGFSLMQPAL
MLVSYLAVYVSIYMVSGMVETDPTVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSIGRLKEILNTEPAMTFGTEQE
EEVSGSIVFEDVSFTYPNDDEPTLRHISFKIEPGQMVGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKPIKSLSQSTL
RQTVSIVLQKAILFSGTIADNLRQGSATADDHAMERAARIAQAKEFIDRMDDRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSERLVQEALNKELKETTTVIIAQKISSVVKADKILVLDQGQLIGEGTHAELVANNAIYREIY
ETQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=458719 I6J14_RS09060 WP_115253150.1 1800664..1802373(+) (rcrP) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGCTTAAAGAAGCGATTTTGCGTTACAAATGGTACACATTGGGCTCGCTCATCATGATTATTGGGGTGGTAGCGAGCAG
TTTGCTGCAGCCTCATTATTTAAAAGATGTGCTGAGTGCTGTTATTCAAAATAACCAAGGTAAGATTTACAATGTGGGGA
TATTGTTGCTTATTATTGCGCTGATGGGATTGATTTCCGGGGCAGTTAATACTATTTTAGCTGCTAAGATTGCTCAAGGG
GTCTCAGCGGATATTCGAGAAAAGACTTTTCGAAAAATTCAGAGTTTTTCATATGCTAATGTGGAGGCATTTAATGCTGG
GAACCTCGTGGTTCGGATGACCAATGATATTAACCAAATCCAAAATTTGGTAATGATGCTGTTTCAAGTGCTTTTCCGTC
TGCCGATTCTCTTTATTGGAGCTTTTATTATGGCGGTGCAGACCCTACCTGACTTATGGTGGGTGATTGTGCTGATGGTT
ATTTTGATTGGTCTTATCATGGTTTTGGTCATGAGTCAGATGGGCCCACGTTTTGGGAAATTCCAAAAGTTGATGGACAA
GATTAATCGAATTGCTAAGGAAAACCTTCGTGGCGTGCGTGTGGTTAAATCCTTTGTGCAAGAACGGGAACAATATGCCA
AATTTAAAGAAACGTCCAATGAACTATTAGATTTGAATCTCTTTATCGGTTATGGTTTTTCGTTGATGCAACCTGCTTTG
ATGTTGGTATCTTATTTGGCAGTGTATGTGTCCATCTATATGGTTTCAGGCATGGTTGAAACAGATCCTACTGTTATTGG
GAATATTGCTTCTTTTATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTCGGCTTTATGGGCATGCAAGCTA
GTCGCGCCTTTGTCTCTATTGGTCGTCTCAAAGAGATTCTCAATACTGAGCCAGCCATGACCTTTGGCACTGAGCAAGAA
GAAGAGGTTTCAGGTAGCATTGTCTTTGAGGATGTCAGCTTTACTTATCCTAATGATGATGAGCCGACCTTACGTCATAT
TTCCTTTAAGATTGAACCTGGTCAAATGGTTGGTGTTGTCGGTGCTACTGGTGCTGGGAAGTCTACACTGGCACAGCTTA
TTCCGCGCTTGTTTGATCCGCAAGAAGGTCAAATCTTACTGGGAGGCAAACCGATTAAATCCTTGAGTCAATCGACTCTT
CGTCAAACGGTTTCTATCGTGTTGCAAAAGGCTATTCTCTTTTCGGGAACCATTGCAGATAATCTTCGTCAAGGATCAGC
AACTGCAGATGATCATGCCATGGAACGAGCTGCACGTATTGCTCAAGCCAAGGAATTTATCGATCGTATGGATGACCGCT
ATGAAAGCCAAGTGGAAGAACGAGGCAATAACTTCTCCGGTGGTCAAAAACAACGGATGTCAATTGCGCGTGGCGTCATT
AACCAACCTAAGATTCTTGTTTTGGATGACTCAACATCGGCTCTGGATGCCAAGTCAGAAAGATTAGTTCAAGAAGCCTT
GAATAAAGAGTTGAAAGAGACCACCACAGTGATCATTGCCCAAAAGATTTCGTCAGTGGTAAAGGCTGATAAGATTTTAG
TTCTCGATCAGGGCCAACTGATTGGCGAAGGAACTCATGCTGAGTTGGTTGCTAATAATGCGATTTATCGTGAAATTTAT
GAGACCCAAAAAGGGAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

35.103

100

0.36