Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6J14_RS07985 Genome accession   NZ_CP068057
Coordinates   1587229..1587993 (-) Length   254 a.a.
NCBI ID   WP_003049037.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1582229..1592993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS07965 (I6J14_07965) purC 1583594..1584304 (-) 711 WP_003049045.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  I6J14_RS07970 (I6J14_07970) - 1584558..1585806 (+) 1249 WP_174221685.1 ISL3 family transposase -
  I6J14_RS07975 (I6J14_07975) - 1585880..1586122 (-) 243 WP_003049042.1 phosphopantetheine-binding protein -
  I6J14_RS07980 (I6J14_07980) plsX 1586115..1587122 (-) 1008 WP_115252488.1 phosphate acyltransferase PlsX -
  I6J14_RS07985 (I6J14_07985) recO 1587229..1587993 (-) 765 WP_003049037.1 DNA repair protein RecO Machinery gene
  I6J14_RS07990 (I6J14_07990) - 1588223..1589185 (-) 963 WP_003049033.1 ribose-phosphate diphosphokinase -
  I6J14_RS07995 (I6J14_07995) - 1589352..1590548 (-) 1197 WP_003049030.1 CHAP domain-containing protein -
  I6J14_RS08000 (I6J14_08000) - 1591100..1592205 (+) 1106 WP_115252487.1 IS3-like element ISSdy2 family transposase -
  I6J14_RS08005 (I6J14_08005) - 1592251..1592736 (+) 486 Protein_1569 transposase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 29985.18 Da        Isoelectric Point: 5.7481

>NTDB_id=458707 I6J14_RS07985 WP_003049037.1 1587229..1587993(-) (recO) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MQLNESLGIVLFNRNYREDDKLVKIFTEAAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=458707 I6J14_RS07985 WP_003049037.1 1587229..1587993(-) (recO) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGAAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGGCAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGATCTTTTTCGACTTTCCTATGCGAGCTATGTAGTGGCTTTGGCAGATGCTGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTTTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTTTGCCCTGAACATTATCATAAAGATGATTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACTATTCAGTTTGATGAATTGAGAACCATTTCCTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAGTTATATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGAGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618