Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV345_RS15080 Genome accession   NZ_CP056200
Coordinates   3072410..3073024 (-) Length   204 a.a.
NCBI ID   WP_181635757.1    Uniprot ID   -
Organism   Citrobacter sp. RHBSTW-00986     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067410..3078024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV345_RS15065 (HV345_15075) helD 3067634..3069688 (-) 2055 WP_181635756.1 DNA helicase IV -
  HV345_RS15070 (HV345_15080) - 3069814..3070260 (+) 447 WP_016152485.1 YccF domain-containing protein -
  HV345_RS15075 (HV345_15085) yccS 3070279..3072432 (+) 2154 WP_016152484.1 YccS family putative transporter -
  HV345_RS15080 (HV345_15090) sxy/tfoX 3072410..3073024 (-) 615 WP_181635757.1 TfoX/Sxy family DNA transformation protein Regulator
  HV345_RS15085 (HV345_15095) sulA 3073241..3073750 (+) 510 WP_032931135.1 SOS-induced cell division inhibitor SulA -
  HV345_RS15090 (HV345_15100) ompA 3074108..3075166 (+) 1059 WP_181635758.1 porin OmpA -
  HV345_RS15095 (HV345_15105) matP 3075264..3075716 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV345_RS15100 (HV345_15110) - 3075902..3077662 (+) 1761 WP_047414152.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23145.50 Da        Isoelectric Point: 8.1116

>NTDB_id=458675 HV345_RS15080 WP_181635757.1 3072410..3073024(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00986]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATCRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458675 HV345_RS15080 WP_181635757.1 3072410..3073024(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-00986]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGTG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681