Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   I6J14_RS03960 Genome accession   NZ_CP068057
Coordinates   820442..823666 (-) Length   1074 a.a.
NCBI ID   WP_115252776.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 815442..828666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS03950 (I6J14_03950) - 815552..816656 (-) 1105 Protein_784 aminotransferase -
  I6J14_RS03955 (I6J14_03955) rexA 816813..820442 (-) 3630 WP_181877492.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6J14_RS03960 (I6J14_03960) rexB 820442..823666 (-) 3225 WP_115252776.1 ATP-dependent nuclease subunit B Machinery gene
  I6J14_RS03965 (I6J14_03965) - 823841..824758 (+) 918 WP_115252775.1 neutral zinc metallopeptidase -
  I6J14_RS03970 (I6J14_03970) - 824852..825520 (-) 669 WP_003050148.1 ABC transporter ATP-binding protein -
  I6J14_RS03975 (I6J14_03975) - 825530..826606 (-) 1077 WP_115252774.1 ABC transporter permease -
  I6J14_RS03980 (I6J14_03980) - 826679..827065 (-) 387 WP_003050146.1 YbgA family protein -
  I6J14_RS03985 (I6J14_03985) - 827058..827435 (-) 378 WP_003050145.1 OsmC family protein -

Sequence

Protein


Download         Length: 1074 a.a.        Molecular weight: 123546.34 Da        Isoelectric Point: 5.1168

>NTDB_id=458666 I6J14_RS03960 WP_115252776.1 820442..823666(-) (rexB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MKLIYTEMTYSMTDILVAEARQAASRGYRVFYLAPNSLSFEKEREVLTLLPERGSFSITVTRFAQMARYFTISNSESKQA
LDETALAMIFYRVLMQLTPEDLPVYGRLKDDPAFIKQLIDLYQELKTANLSVYELTELDTPGKQEDLIRIISLAEELMTQ
QDYHQDSALMSFAKTIATGQLDEQLSKTVLVIDGFSRFSAEEDYLLSLLNSKCQEIVIGSYISQKSYQKPFIKGNIYEAS
IQFLQGLAEQYETKPIYSQSEKVFAPSFSRVTQLFEAHHDFSQVDWQLEEKDKEDIHIWQSHQQKEEIEHVAKAIREKLY
EGYRYKDMLVLLGDVDAYQLQIGPIFDKFEIPYYLGKAESMTAHPLVQFIESLERSQRYNWRREDILNLLKSGLFGSFAD
SDVDRFEEYLQFADIKGFTKFSRPFTINSSRHYPLELLNEIREAIFSPLQALFKSQKQLGTSLLDKLMTFFKDVQLAENM
KNLGQNELETEKNEEVWKTFTDVLTSFYQTFGQEKLKLADCLSLIKMGMQSAHYRIVPATLDVVSIKSYDLVQPHSKPFV
YAIGLTQSHFPKQVKETGLLSDQERARINEITDSFQHFDIGSIENSRKNHQTALSLLNAATQELVLSVPALVNEFSDDLS
PYLKELMSFGLPLIDKGSNRFSYAASDIGNYKALLSRLVDLNREAIVADMTEQDKTFWTVALRYLRRQLRHQQVTLPMLD
DHLVTKPLASEVIEARFPSDRPLRLSSTALTVFYNNQYKYFLQYVLGLQEAESIHPDARIHGQYLHRVFELVMTDHTAAS
FDSKLAQAIHQTNQEKEFQYIYQDSAENRFSLDLLEDIAKSTASILRLNQNMTVSRQEDPFALQVTDQIVVHGIIDRIDQ
LSDGSLGIVDYKSSANQFDIGKFYNGLSPQLVTYLAALQQQFGPDDLGHLFGAMYLHLQEPKLDLATFKALDDKLVESIY
KELTYKGIFLESEKEYLANGAYQTRNAIYSTEELQTLLTYNALLYKKAAEQIKKGHFVINPYTSDGKSVQGEQLKAITRF
EADLDLDQARHLVTLPAKDKRQQFLTLMRKEDNL

Nucleotide


Download         Length: 3225 bp        

>NTDB_id=458666 I6J14_RS03960 WP_115252776.1 820442..823666(-) (rexB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAAACTAATTTATACAGAAATGACCTATTCAATGACAGACATTTTGGTAGCTGAGGCAAGGCAGGCTGCCTCTCGAGG
TTACCGTGTCTTTTACCTTGCTCCAAACTCTCTCTCGTTTGAAAAGGAAAGAGAAGTATTGACCTTGCTACCAGAACGAG
GGTCCTTCTCCATTACCGTGACGCGTTTTGCTCAGATGGCAAGGTATTTTACGATCTCTAACTCTGAGTCAAAACAAGCC
TTGGACGAGACAGCCTTAGCCATGATTTTTTACCGCGTCTTAATGCAGTTAACCCCTGAAGATCTTCCTGTTTATGGTCG
CTTGAAAGACGATCCGGCTTTTATTAAGCAGCTAATTGATCTCTATCAAGAATTAAAAACGGCTAACCTTAGTGTCTATG
AGTTAACCGAGTTAGATACTCCCGGTAAACAAGAAGACCTAATAAGAATTATCTCCCTTGCCGAAGAACTCATGACTCAG
CAAGATTACCATCAAGACAGTGCTTTGATGTCCTTTGCTAAAACTATTGCAACAGGTCAATTGGACGAACAACTGTCAAA
AACAGTGCTAGTTATTGATGGGTTTTCTCGTTTTTCTGCTGAAGAAGATTACCTATTATCTCTTCTTAACAGCAAGTGTC
AAGAGATTGTGATAGGAAGTTATATTAGTCAGAAATCCTACCAAAAACCGTTTATTAAAGGAAATATTTATGAGGCCAGT
ATCCAATTTTTGCAAGGGCTTGCTGAACAGTACGAGACAAAACCGATTTATTCTCAATCGGAAAAGGTCTTCGCGCCGTC
TTTTTCAAGAGTGACTCAGTTATTTGAAGCTCATCATGATTTTTCCCAAGTAGACTGGCAATTGGAAGAAAAAGATAAGG
AAGACATTCACATCTGGCAAAGCCATCAGCAAAAAGAAGAGATAGAGCATGTTGCTAAGGCTATTCGAGAAAAATTGTAT
GAAGGTTATCGCTATAAGGACATGTTGGTCTTGCTAGGAGATGTGGACGCCTACCAGTTACAAATTGGTCCCATTTTTGA
CAAATTTGAGATTCCTTACTATTTAGGGAAGGCAGAATCCATGACCGCTCATCCCTTAGTGCAATTTATAGAATCTTTAG
AGCGGAGCCAGCGCTATAATTGGCGTCGTGAAGATATTTTAAATCTGCTCAAATCAGGACTTTTTGGAAGTTTTGCCGAT
AGTGACGTTGACCGCTTTGAAGAATACCTCCAATTTGCAGACATTAAAGGATTTACTAAATTTTCAAGGCCTTTTACGAT
TAATTCCTCTCGTCATTACCCGTTGGAGTTGTTAAACGAGATAAGAGAAGCTATTTTTTCTCCTTTGCAAGCCTTATTTA
AGAGTCAAAAACAATTGGGAACGTCATTGCTAGATAAATTGATGACCTTTTTTAAAGATGTTCAGTTAGCAGAAAATATG
AAAAACCTGGGCCAAAATGAGCTAGAGACAGAGAAAAATGAAGAAGTTTGGAAAACATTCACCGACGTGTTAACCTCTTT
TTACCAGACTTTTGGTCAGGAAAAGTTGAAACTGGCGGACTGTCTTTCCTTGATCAAAATGGGAATGCAGTCGGCCCATT
ATCGTATTGTTCCAGCTACTTTAGATGTTGTTTCTATCAAATCCTATGATTTGGTGCAACCTCACTCAAAACCTTTTGTT
TATGCTATTGGTCTTACGCAATCTCATTTTCCAAAGCAAGTCAAAGAGACAGGGTTACTTTCTGATCAAGAGCGGGCAAG
AATTAATGAAATCACTGATAGCTTCCAGCATTTTGACATTGGCAGTATCGAAAATAGCAGGAAAAATCATCAGACAGCTC
TTTCACTTTTGAATGCAGCCACTCAAGAATTGGTCCTGAGTGTCCCAGCACTAGTGAACGAATTTTCAGATGACTTGTCT
CCTTACCTCAAGGAATTGATGTCCTTTGGTCTTCCACTGATTGATAAAGGAAGCAATCGCTTTTCTTATGCTGCTAGTGA
TATTGGCAACTATAAGGCCCTTTTGTCACGTTTAGTTGACCTTAATCGAGAAGCTATAGTGGCTGACATGACCGAACAGG
ACAAGACTTTTTGGACTGTTGCCCTTCGTTATCTCCGACGACAATTAAGGCATCAGCAGGTCACACTTCCTATGCTAGAT
GACCATTTGGTGACGAAACCTCTAGCCTCCGAGGTTATTGAGGCACGTTTTCCAAGCGATCGTCCGCTTAGACTATCATC
GACTGCTCTGACTGTTTTTTATAATAACCAGTACAAGTATTTTTTGCAGTATGTCCTAGGATTACAAGAAGCCGAATCTA
TTCATCCTGATGCCCGCATTCATGGGCAATATTTACATCGGGTATTTGAATTGGTGATGACGGATCACACAGCAGCTTCC
TTTGACAGCAAATTGGCGCAAGCTATTCATCAAACTAACCAAGAAAAAGAATTTCAATATATCTATCAAGACAGTGCTGA
AAATCGTTTCAGTTTAGACTTGCTTGAAGATATTGCTAAGTCGACCGCTTCTATTTTGCGTCTTAATCAGAATATGACTG
TAAGTCGACAAGAAGACCCTTTTGCCCTGCAAGTGACAGATCAGATAGTGGTCCATGGGATAATTGACCGGATCGATCAG
TTAAGTGATGGGAGTCTAGGGATTGTTGATTATAAATCCAGCGCGAATCAGTTTGATATCGGGAAATTTTACAATGGGTT
AAGCCCACAACTTGTTACTTATCTGGCTGCTTTGCAGCAACAATTTGGACCAGATGATTTAGGGCACTTATTTGGTGCCA
TGTACTTGCATTTGCAAGAGCCTAAGTTAGACTTAGCAACTTTCAAAGCACTTGATGATAAACTGGTTGAAAGTATTTAT
AAAGAGTTGACCTATAAAGGAATCTTTTTAGAGTCTGAAAAAGAATATTTAGCAAATGGTGCTTACCAGACGCGAAATGC
AATTTACTCCACTGAAGAGTTACAAACCCTCTTGACTTATAATGCTCTTCTTTACAAGAAAGCAGCAGAGCAGATTAAGA
AAGGGCATTTTGTCATTAACCCTTATACAAGTGATGGGAAGTCTGTTCAAGGAGAACAACTCAAGGCTATTACACGTTTT
GAGGCTGATCTTGATTTGGACCAAGCAAGGCATCTTGTAACGCTCCCTGCCAAAGATAAGCGCCAGCAGTTTTTAACGTT
AATGAGAAAGGAGGATAACCTGTGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(744-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

42.427

100

0.433