Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV350_RS15635 Genome accession   NZ_CP056185
Coordinates   3221851..3222465 (-) Length   204 a.a.
NCBI ID   WP_103766104.1    Uniprot ID   -
Organism   Citrobacter sp. RHBSTW-01013     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3216851..3227465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV350_RS15620 (HV350_15620) helD 3217075..3219129 (-) 2055 WP_181628867.1 DNA helicase IV -
  HV350_RS15625 (HV350_15625) - 3219255..3219701 (+) 447 WP_181628868.1 YccF domain-containing protein -
  HV350_RS15630 (HV350_15630) yccS 3219720..3221873 (+) 2154 WP_016152484.1 YccS family putative transporter -
  HV350_RS15635 (HV350_15635) sxy/tfoX 3221851..3222465 (-) 615 WP_103766104.1 TfoX/Sxy family DNA transformation protein Regulator
  HV350_RS15640 (HV350_15640) sulA 3222682..3223191 (+) 510 WP_181628870.1 SOS-induced cell division inhibitor SulA -
  HV350_RS15645 (HV350_15645) ompA 3223549..3224607 (+) 1059 WP_016156137.1 porin OmpA -
  HV350_RS15650 (HV350_15650) matP 3224706..3225158 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  HV350_RS15655 (HV350_15655) - 3225344..3227104 (+) 1761 WP_080858512.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23171.48 Da        Isoelectric Point: 8.2348

>NTDB_id=458607 HV350_RS15635 WP_103766104.1 3221851..3222465(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-01013]
MKEKSYARIYKSQEYLASLGTIHYRSLFGSYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGITDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458607 HV350_RS15635 WP_103766104.1 3221851..3222465(-) (sxy/tfoX) [Citrobacter sp. RHBSTW-01013]
ATGAAAGAAAAATCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCAGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTGTCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTCGAGACCTTGCTAA
ATGAAGCAGGAATTACGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCTCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681