Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6J15_RS04595 Genome accession   NZ_CP068056
Coordinates   891397..894222 (+) Length   941 a.a.
NCBI ID   WP_058814219.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 886397..899222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS04565 (I6J15_04565) - 886499..887755 (-) 1257 WP_111712988.1 ISL3 family transposase -
  I6J15_RS09100 - 888007..888183 (+) 177 WP_231853221.1 hypothetical protein -
  I6J15_RS09105 - 888259..888531 (+) 273 WP_236585640.1 hypothetical protein -
  I6J15_RS04575 (I6J15_04575) - 888533..888757 (+) 225 WP_043895293.1 helix-turn-helix domain-containing protein -
  I6J15_RS04580 (I6J15_04580) - 888964..889185 (+) 222 WP_111712987.1 hypothetical protein -
  I6J15_RS04585 (I6J15_04585) - 889226..889882 (-) 657 WP_020917420.1 DUF1129 domain-containing protein -
  I6J15_RS04590 (I6J15_04590) - 890156..891100 (-) 945 WP_020917419.1 magnesium transporter CorA family protein -
  I6J15_RS04595 (I6J15_04595) uvrA 891397..894222 (+) 2826 WP_058814219.1 excinuclease ABC subunit UvrA Machinery gene
  I6J15_RS09390 - 894324..894809 (+) 486 WP_223903581.1 MATE family efflux transporter -
  I6J15_RS09395 - 894829..895068 (+) 240 WP_006531988.1 hypothetical protein -
  I6J15_RS09400 - 895126..895602 (+) 477 WP_145960242.1 hypothetical protein -
  I6J15_RS04605 (I6J15_04605) - 895706..896767 (+) 1062 WP_111712986.1 M24 family metallopeptidase -
  I6J15_RS04610 (I6J15_04610) - 896778..897128 (+) 351 WP_061408571.1 hypothetical protein -
  I6J15_RS04615 (I6J15_04615) - 897121..897576 (+) 456 WP_020917414.1 deoxycytidylate deaminase -
  I6J15_RS04620 (I6J15_04620) efp 897701..898261 (+) 561 WP_020917413.1 elongation factor P -
  I6J15_RS04625 (I6J15_04625) - 898340..898729 (+) 390 WP_043895114.1 Asp23/Gls24 family envelope stress response protein -
  I6J15_RS04630 (I6J15_04630) nusB 898722..899150 (+) 429 WP_043895112.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103843.11 Da        Isoelectric Point: 6.2008

>NTDB_id=458587 I6J15_RS04595 WP_058814219.1 891397..894222(+) (uvrA) [Streptococcus lutetiensis strain FDAARGOS_1158]
MQDKLIIRGARAHNLKNVNVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARMFLGNMEKPDVDSIEGL
SPAISIDQKTTSKNPRSTVGTTTEINDYLRLLYARVGTPYCINGHGVITASSVEQIVDQVLELPERTRMQILAPVVRRKK
GQHKTIFDRIQKDGYVRVRVDGEIYDISGVPELSKSKMHNIEIVVDRLINKDGIRSRLFDSVEAALRLADGYIIIDTMDG
NELLFSEHYSCPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGNKLEVDLDLVIPDRSKTLREGALAPWNPISSNYYPAML
GQAMEAFGVDMDTPFEDLSEEEQNLVLYGSGEREFHFHYVNDFGGERNIDLPFEGVVNNINRRYHETNSDFTRNVMRGYM
NELPCPTCHGYRLNNQALCVRVGGENGMNIGQVSDLSVADHLELLNHLELSENEKTIATPIVKEIKDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIDSLKKMRDLGNTLIVVEHDEDTMCQADWLI
DVGPGAGEFGGQIVASGTPGEVAKNKKSITGQYLSGAKEIPVPLERRKGNGRFLRVLGACENNLQNIDVTFPLGKFIAVT
GVSGSGKSTLVNSILKKAVAQKLNRNSAKPGKHKALEGVENIERLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAKTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGTRYNSETLEVHYKDKNIAEILDMTVNDAVEFF
APIPKIARKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTDDIARLLKVLQRFVD
DGNTVLVIEHNLDVIKTADYIIDLGPEGGVGGGQIVATGTPEEVAKVKESFTGQYLKDKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=458587 I6J15_RS04595 WP_058814219.1 891397..894222(+) (uvrA) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGCAAGATAAATTGATTATTCGTGGGGCTCGTGCCCACAATTTAAAAAATGTCAATGTTGAGATTCCGCGGGATAAATT
AGTTGTTGTGACCGGTTTGTCGGGGTCTGGAAAATCAAGTTTGGCATTTGATACGATTTACGCAGAAGGGCAACGTCGTT
ACGTTGAAAGCTTGTCTGCTTATGCCCGCATGTTTCTTGGAAATATGGAAAAACCTGATGTGGATTCGATTGAAGGACTT
AGCCCAGCGATTTCTATTGACCAAAAAACAACTAGTAAAAACCCGCGCTCTACTGTAGGAACAACGACAGAAATCAATGA
TTATCTGCGCCTTTTGTACGCGCGTGTGGGGACGCCTTACTGTATTAATGGGCACGGTGTTATTACGGCATCATCTGTTG
AACAGATTGTTGACCAAGTTTTGGAATTGCCAGAACGTACCCGTATGCAGATTTTGGCGCCTGTAGTTCGTCGTAAAAAA
GGACAACACAAAACGATTTTTGACCGCATTCAAAAAGACGGTTATGTACGTGTGCGCGTGGACGGTGAGATTTATGATAT
TTCAGGGGTGCCTGAACTTTCTAAGAGTAAAATGCACAATATCGAAATCGTTGTTGATCGCTTGATTAATAAAGACGGCA
TTCGTTCACGTCTCTTTGATTCTGTGGAAGCTGCGCTTCGTTTGGCTGATGGTTATATCATTATCGACACTATGGATGGC
AATGAATTGCTTTTCTCAGAACACTATTCTTGCCCAGTCTGTGGCTTTACTGTTCCCGAATTGGAGCCACGTTTGTTTTC
ATTTAATGCGCCATTTGGTTCATGTCCAACCTGTGATGGTTTAGGAAATAAACTGGAAGTTGACTTGGATTTGGTGATTC
CTGATCGTAGTAAGACTCTTCGTGAAGGTGCGCTAGCACCATGGAATCCAATTTCATCAAACTATTATCCTGCTATGCTT
GGGCAAGCTATGGAAGCTTTTGGTGTTGATATGGATACACCTTTTGAAGACTTGAGCGAAGAAGAGCAAAATCTTGTGCT
TTACGGTTCAGGTGAGCGTGAATTCCACTTCCATTATGTCAATGATTTTGGTGGCGAACGCAACATTGACCTACCATTTG
AAGGTGTTGTCAACAATATCAATCGTCGTTACCACGAGACAAACAGCGACTTCACTCGTAATGTCATGCGCGGTTACATG
AATGAGTTGCCATGTCCAACATGTCACGGTTATCGTTTGAATAATCAAGCGCTTTGTGTGCGCGTGGGCGGTGAAAATGG
CATGAACATTGGACAAGTTTCTGATTTGTCAGTAGCTGACCATTTGGAACTTCTAAATCACCTAGAACTCTCTGAAAATG
AAAAAACAATTGCTACACCGATTGTCAAAGAAATCAAAGACCGCTTGACTTTCTTAAATAATGTCGGCTTGAATTATTTG
ACTTTGTCACGTTCTGCGGGGACTTTGTCAGGTGGTGAAAGCCAACGTATCCGTTTGGCAACGCAAATTGGTTCAAATCT
ATCAGGTGTCCTTTATATTCTTGATGAACCGTCAATCGGACTTCACCAACGTGATAATGACCGTTTGATTGATAGTTTGA
AGAAAATGCGTGATCTTGGTAATACCTTGATTGTCGTTGAACACGATGAAGACACCATGTGTCAAGCTGACTGGTTGATT
GATGTTGGACCAGGTGCAGGTGAATTTGGTGGGCAAATCGTTGCCTCTGGGACACCAGGAGAAGTGGCTAAAAACAAAAA
ATCAATCACTGGACAATATTTGTCTGGTGCTAAAGAAATTCCAGTTCCGCTTGAGCGTCGTAAAGGTAACGGACGTTTCC
TACGAGTGCTTGGTGCTTGCGAAAATAACTTGCAAAATATCGATGTGACTTTCCCACTTGGTAAATTTATCGCAGTCACA
GGTGTTTCAGGTTCTGGAAAATCAACCTTGGTCAATAGTATTTTGAAAAAAGCTGTCGCTCAAAAATTAAACCGAAATTC
TGCCAAACCTGGTAAACACAAAGCACTTGAAGGTGTGGAAAACATCGAACGCTTGATTGACATTGACCAAAGCCCAATCG
GTCGTACACCGCGTTCAAATCCTGCAACTTATACAGGTGTTTTTGATGATATTCGTGACCTTTTTGCTAAGACCAATGAA
GCTAAAATTCGTGGTTACAAGAAAGGGCGCTTCTCATTTAACGTCAAAGGTGGACGTTGTGAGGCTTGTTCTGGTGATGG
TATTATCAAGATTGAAATGCACTTCTTGCCAGATGTTTACGTACCATGTGAAGTTTGCCACGGTACACGTTATAACAGTG
AAACGCTTGAAGTTCATTACAAAGATAAAAATATCGCTGAAATCCTTGATATGACAGTCAACGATGCCGTTGAATTCTTT
GCACCAATTCCTAAAATCGCACGCAAATTGCAAACTATCAAAGACGTTGGACTTGGTTATGTCACACTTGGACAACCAGC
CACAACCCTTTCTGGTGGTGAAGCACAGCGTATGAAATTGGCGAGTGAACTTCACAAACGCTCAACTGGTAAGAGCCTTT
ATATCCTTGATGAACCAACGACAGGTCTTCACACAGATGACATTGCTCGTCTACTTAAAGTCCTTCAACGTTTCGTGGAT
GATGGAAATACCGTGCTTGTTATTGAACACAATCTTGATGTGATTAAGACAGCTGACTATATTATCGACCTTGGACCAGA
AGGCGGTGTTGGTGGCGGACAAATCGTTGCCACAGGCACACCAGAAGAAGTCGCCAAAGTCAAAGAATCCTTCACAGGAC
AATATTTGAAAGATAAATTGAAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

84.255

99.894

0.842
  uvrA Streptococcus pneumoniae TIGR4

84.255

99.894

0.842
  uvrA Streptococcus pneumoniae D39

84.255

99.894

0.842