Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6J15_RS03600 Genome accession   NZ_CP068056
Coordinates   688715..689308 (+) Length   197 a.a.
NCBI ID   WP_020917597.1    Uniprot ID   A0AB33APB1
Organism   Streptococcus lutetiensis strain FDAARGOS_1158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 683715..694308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J15_RS03585 (I6J15_03585) - 683747..684100 (+) 354 WP_020917600.1 YlbF family regulator -
  I6J15_RS03590 (I6J15_03590) hexA 684087..686654 (+) 2568 WP_058814330.1 DNA mismatch repair protein MutS Machinery gene
  I6J15_RS03595 (I6J15_03595) hexB 686774..688714 (+) 1941 WP_020917598.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6J15_RS03600 (I6J15_03600) ruvA 688715..689308 (+) 594 WP_020917597.1 Holliday junction branch migration protein RuvA Machinery gene
  I6J15_RS03605 (I6J15_03605) - 689338..689889 (+) 552 WP_058814328.1 DNA-3-methyladenine glycosylase I -
  I6J15_RS09020 - 690090..690317 (+) 228 WP_233422882.1 MFS transporter -
  I6J15_RS03615 (I6J15_03615) cinA 690792..692051 (+) 1260 WP_111713037.1 competence/damage-inducible protein A Machinery gene
  I6J15_RS03620 (I6J15_03620) recA 692098..693252 (+) 1155 WP_020917594.1 recombinase RecA Machinery gene
  I6J15_RS03625 (I6J15_03625) spx 693450..693848 (+) 399 WP_004233512.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21781.27 Da        Isoelectric Point: 5.8325

>NTDB_id=458576 I6J15_RS03600 WP_020917597.1 688715..689308(+) (ruvA) [Streptococcus lutetiensis strain FDAARGOS_1158]
MYDYIKGKLTKITAKYIIIEAGGLGYIVNVANPYSFSDVMNQDIQVYLHQVIREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVNAIDTSNIKYLMKFPKIGKKTAQQMVLDLAGKFVDVSVENGKASQTKTAANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKLSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=458576 I6J15_RS03600 WP_020917597.1 688715..689308(+) (ruvA) [Streptococcus lutetiensis strain FDAARGOS_1158]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCAAAATACATTATTATTGAAGCAGGGGGATTAGGCTATAT
TGTCAACGTTGCCAATCCGTACAGCTTTTCAGATGTGATGAATCAAGATATCCAAGTCTACCTTCATCAAGTAATTCGTG
AAGATGCTCAACTTTTGTTTGGCTTTCATACTGAAGACGAAAAGGCTGTTTTTCTTAATCTGATTTCAGTTTCAGGGATT
GGTCCTACAACAGCGCTAGCTATTATCGCGGTGGATGATAACGAAGGTTTGGTTAATGCCATCGACACAAGCAACATTAA
ATACTTGATGAAATTCCCAAAAATCGGGAAAAAAACTGCCCAACAAATGGTTTTGGATTTGGCAGGAAAATTTGTCGATG
TTTCTGTGGAAAATGGCAAAGCTTCTCAGACCAAAACGGCAGCAAACGAGCAGCTTGAAGAAGCCATGGAAGCTCTTTTG
GCACTTGGATATAAAGCAGCAGAGCTTAAGAAAATCCGTAAGTTCTTTGAAGGCACAAATGAAACAGCAGAACAATACAT
CAAATTAAGCCTTAAGATGTTGATGAAAGGCTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AB33APB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.172

100

0.675
  ruvA Streptococcus pneumoniae D39

67.172

100

0.675
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.67
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.426