Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HV351_RS09310 Genome accession   NZ_CP056181
Coordinates   1961889..1962503 (+) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain RHBSTW-01016     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1956889..1967503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV351_RS09290 (HV351_09300) - 1957258..1959018 (-) 1761 WP_174329422.1 AAA family ATPase -
  HV351_RS09295 (HV351_09305) matP 1959204..1959656 (+) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HV351_RS09300 (HV351_09310) ompA 1959746..1960804 (-) 1059 WP_003836839.1 porin OmpA -
  HV351_RS09305 (HV351_09315) sulA 1961162..1961671 (-) 510 WP_003836838.1 SOS-induced cell division inhibitor SulA -
  HV351_RS09310 (HV351_09320) sxy/tfoX 1961889..1962503 (+) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HV351_RS09315 (HV351_09325) yccS 1962481..1964634 (-) 2154 WP_032939270.1 YccS family putative transporter -
  HV351_RS09320 (HV351_09330) - 1964653..1965099 (-) 447 WP_003035892.1 YccF domain-containing protein -
  HV351_RS09325 (HV351_09335) helD 1965225..1967279 (+) 2055 WP_149911495.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=458576 HV351_RS09310 WP_003035889.1 1961889..1962503(+) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-01016]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=458576 HV351_RS09310 WP_003035889.1 1961889..1962503(+) (sxy/tfoX) [Citrobacter freundii strain RHBSTW-01016]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686