Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   KSO_RS00730 Genome accession   NC_020272
Coordinates   145470..146159 (+) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 140470..151159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS00710 (KSO_000730) - 141635..142669 (+) 1035 WP_015387481.1 Gfo/Idh/MocA family protein -
  KSO_RS00715 (KSO_000735) - 142688..143557 (+) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  KSO_RS00720 (KSO_000740) iolI 143645..144487 (+) 843 WP_015387483.1 2-keto-myo-inositol isomerase -
  KSO_RS00725 (KSO_000745) iolJ 144490..145362 (+) 873 WP_015387484.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  KSO_RS00730 (KSO_000750) braR 145470..146159 (+) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  KSO_RS00735 (KSO_000755) yxdK 146156..147133 (+) 978 WP_014306127.1 two-component system sensor histidine kinase YxdK -
  KSO_RS00740 (KSO_000760) yxdL 147278..148051 (+) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  KSO_RS00745 (KSO_000765) yxdM 148026..149894 (+) 1869 WP_015387485.1 ABC transporter permease YxdM -
  KSO_RS00750 (KSO_000770) - 149908..150255 (+) 348 WP_004393256.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=45856 KSO_RS00730 WP_004393241.1 145470..146159(+) (braR) [Bacillus amyloliquefaciens IT-45]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=45856 KSO_RS00730 WP_004393241.1 145470..146159(+) (braR) [Bacillus amyloliquefaciens IT-45]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGCGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTATGCCGCCAAGCAGGGTGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment